Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 44.7 bits (104), Expect = 1e-09
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 39  QQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTYQSDQPLTAWVHAIARYKMID 98
           Q   A + A + +R+ G      DLVQE  L     R      + L  ++   A    ID
Sbjct: 26  QAQRARMEALVSRRV-GCRATASDLVQELFLRFW--RRPEVKVEALDTYLLRCAGNLAID 82

Query: 99  LLRAKSVREDLHD---PLDDDLAVFAESAEEASDARRDLGGL---LQTLPERQRLPIVHV 152
            LR++S RE + +   P+ +  A  A++ E+A +   DL  +   L+ LPER R   +  
Sbjct: 83  HLRSESSRERVAEAAVPVSE--ASLAQAPEQAVEVDHDLQRIEATLRALPERTRQIFLLN 140

Query: 153 KIEGLSVAEAASLTGMSESAVKVGIHRGLKALAA 186
           +I G   +E A    +S+SAV+  + R L+A  A
Sbjct: 141 RIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKA 174