Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

 Score =  208 bits (530), Expect = 4e-59
 Identities = 108/171 (63%), Positives = 130/171 (76%)

Query: 19  LRSLFLRGLDGDARAYRDFLQQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTY 78
           +++L L+GL GD  AY+DFL  L+ H+RAFL  RL   P E+ED+VQ+ LLA+HN RHTY
Sbjct: 1   MKALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTY 60

Query: 79  QSDQPLTAWVHAIARYKMIDLLRAKSVREDLHDPLDDDLAVFAESAEEASDARRDLGGLL 138
           Q  QPLTAWV AIARYK+ D LR+ S R+  HD LDDD  +FA S  E+++A RDL  LL
Sbjct: 61  QPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLL 120

Query: 139 QTLPERQRLPIVHVKIEGLSVAEAASLTGMSESAVKVGIHRGLKALAARFG 189
           + LPERQRLPIVHVK+EGLSV E A LTG+S SAVKVGIHRGLKAL+   G
Sbjct: 121 KQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIG 171