Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 192 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 59  EVEDLVQECLLAMHNQRHTYQSDQPLTAWVHAIARYKMIDLLRAKSVREDLHDPLDDDLA 118
           E ED++Q+  + + N   T++ D P+  W+  I     +  LR+K +    H+  ++   
Sbjct: 50  EAEDIMQDAFVKVFNNLQTFKRDCPVEFWIRRIMINTALKHLRSKQLLTVSHES-EEVAN 108

Query: 119 VFAESAEEASDARRDLGGLLQTLPERQRLPIVHVKIEGLSVAEAASLTGMSESAVK 174
           + A+    +  +  +L  ++Q+L  R R+      IEG +  E   + G+SE   K
Sbjct: 109 LSADDVNLSGYSLDELLSMIQSLAPRYRMVFNLYAIEGYNHKEIGEMLGISEGTSK 164