Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 168 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score = 65.5 bits (158), Expect = 5e-16
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 51  KRLFGWPDEVEDLVQECLLAMHNQRHTYQSDQPLTAWVHAIARYKMIDLLRAKSVREDLH 110
           + L G   + +DLVQ+CL    ++   ++ D  L AW+  I R+  ID LR + VR + H
Sbjct: 20  RALSGDVTQADDLVQDCLERALSRLALWRRDSNLRAWLFTILRHVWIDELRRRKVRPE-H 78

Query: 111 DPLDD--DLAVFAESAEEASDARRDLGGLLQTLPERQRLPIVHVKIEGLSVAEAASLTGM 168
             +DD  D A  A S  +   A RDL   L  L   QR  ++ V +EGL+ AE A +TG+
Sbjct: 79  GGMDDAMDSAAAAPSQMDRL-AVRDLVAALALLAPEQRETVLLVGLEGLTYAEVAGVTGV 137

Query: 169 SESAVKVGIHRGLKALA 185
               V   + RG   LA
Sbjct: 138 PVGTVMSRLKRGRDRLA 154