Pairwise Alignments

Query, 213 a.a., EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR from Variovorax sp. SCN45

Subject, 213 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  136 bits (342), Expect = 3e-37
 Identities = 73/213 (34%), Positives = 112/213 (52%)

Query: 1   MKTDDLVAMLSTGNVAVPRRSASGRIGLAVLAGLPVSLFILFAEYGMRRDIVQAMFWPMF 60
           M TDDL+  L+     V R S + R+ + V AG   S  ++ A  G+R D+  AM    F
Sbjct: 1   MNTDDLIQTLAGDTRPVARNSIARRLVVGVFAGGVASALMIMASIGVRPDLGAAMQGASF 60

Query: 61  WVKVVFPLCIAAAGFVAVQRLARPGVPARHAWTGAALPVIGIWALAVIAWFVVPPEERMP 120
           W+K  + L ++ A  +   +LARP           A PV+ +  + ++     P  + M 
Sbjct: 61  WLKWGYTLSLSIAALMTTAQLARPDSGRLRGLWALATPVMLLGVVGLVELAQTPHSQWMA 120

Query: 121 SLMGQSWRVCAVSIGLMALPVFAATMVALRGLAPTRPALAGAAAGALAGGLGAAVYALHC 180
             +G SW+ C   +  +++P+F   + + R LAPTR   AGAAAG  AG   A VY +HC
Sbjct: 121 MWLGHSWKSCPWLVLSLSVPIFVGLLWSFRRLAPTRLRAAGAAAGLAAGAFAATVYCIHC 180

Query: 181 MELTAPFLAVWYVSGIAVPVLVGAVLGPRLLRW 213
            E++A F+  WY  G+ +   +G ++GPRLLRW
Sbjct: 181 PEVSAIFVLTWYSLGMLLAAFLGMIVGPRLLRW 213