Pairwise Alignments

Query, 213 a.a., EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR from Variovorax sp. SCN45

Subject, 213 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  193 bits (490), Expect = 2e-54
 Identities = 94/213 (44%), Positives = 125/213 (58%)

Query: 1   MKTDDLVAMLSTGNVAVPRRSASGRIGLAVLAGLPVSLFILFAEYGMRRDIVQAMFWPMF 60
           MKTDDL+A+L+ G   VPR +   R+ +A L GL  +L +    YG+R DI +    P+F
Sbjct: 1   MKTDDLIALLAAGEGPVPRHAVGRRMAVAALGGLTAALLLTITLYGVRSDITEVAQTPLF 60

Query: 61  WVKVVFPLCIAAAGFVAVQRLARPGVPARHAWTGAALPVIGIWALAVIAWFVVPPEERMP 120
           W KV FP  +A  G     RLARPG      W    LP++ +W  A ++    P + R  
Sbjct: 61  WGKVAFPTSLALIGLWLTSRLARPGGKGAAGWKMLGLPLLLVWCGAAVSIAGAPVDARAD 120

Query: 121 SLMGQSWRVCAVSIGLMALPVFAATMVALRGLAPTRPALAGAAAGALAGGLGAAVYALHC 180
            L G++WR CA++I L+++P F     AL+GLAPTR  LAGAA G LAG      Y LHC
Sbjct: 121 LLFGRTWRTCALNIALLSVPAFVTVFWALKGLAPTRLRLAGAAGGLLAGSSATVAYCLHC 180

Query: 181 MELTAPFLAVWYVSGIAVPVLVGAVLGPRLLRW 213
            E+  PF  VWYV G+ VP ++GA  GPR+LRW
Sbjct: 181 PEMGVPFWGVWYVLGMLVPTVLGAWWGPRMLRW 213