Pairwise Alignments

Query, 653 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 695 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  545 bits (1405), Expect = e-159
 Identities = 305/641 (47%), Positives = 405/641 (63%), Gaps = 17/641 (2%)

Query: 1   MGTGIWSMHFVGMLGFSLPISLGFSGGLTLASWVAGVMASGVALWVASEADYGLRRIAIA 60
           MG G+WSMHF+GML FSLPI LG+   LT  S +  V++SG ALW+ S+      ++   
Sbjct: 51  MGIGVWSMHFIGMLAFSLPIDLGYDLALTAFSLLIAVLSSGFALWLVSQPSLPALQLGFG 110

Query: 61  SLAMAVGICGMHYIGMAALDMAPPIVWHVPTVLVSLLIGLGASAAALVIFKYLGNAHSTY 120
           +L M  GI  MHY GMAAL M P I +       SLLI +GASAAAL I   L   H+ Y
Sbjct: 111 ALIMGAGIACMHYTGMAALRMLPGIDYDPTLFGASLLIAVGASAAALWIAFRL-RRHTPY 169

Query: 121 RVAFQLLASVVMGIAICGMHYTGMAAANFPADSVCLS-SGQLYGTGLTAIVGLASGLLLL 179
               + LA+VVMG+AI GMHYTGMAAANFP  S C +  G L G  L  +V + +  +L 
Sbjct: 170 VRQIRGLAAVVMGVAIVGMHYTGMAAANFPEGSFCGALGGGLQGDSLVYLVLITTLAVLA 229

Query: 180 GTLFTSILESRLQLVARRLSSSLEEANAELTQANHELQKRAFTDALTGLPNRVLFEDRLR 239
             L TS+L++RL+     L+ SL  AN ELTQ        A  D LT LPNR L  DR+ 
Sbjct: 230 VALLTSVLDARLEARTAELARSLTLANQELTQL-------ALHDTLTDLPNRTLLADRIE 282

Query: 240 HALARMNRANQLQVEECIAVLFVDLDGFKPINDSFGHSAGDRILCVAAERLARNTRESDT 299
            A+A++          C A++F+DLDGFKP+ND+FGH  GD +L   A RL  +    DT
Sbjct: 283 QAIAKVAEQGG-----CFALMFIDLDGFKPVNDAFGHHIGDLLLKAVAARLRGHLHSQDT 337

Query: 300 VARIGGDEFLLLLEGVHDRAECAEAANRVLRALGEPFNVQGKLLQIACSIGIVLHPEQGE 359
           +ARIGGDEF+LL+E + +  +  + A + +  +  PF V    LQ++ S+GIVL+P  G+
Sbjct: 338 LARIGGDEFVLLVE-LQEPNDAMDVAVKQVNLVSRPFRVAEHDLQLSASLGIVLYPGNGQ 396

Query: 360 PD-KLVANADAAMYEAKRAGGGNYVMFESHMGADAAKQLQLQSDLRRAVELKQFELYYQP 418
              +L+ NADAAMY AK AG   Y  F+  M ++A +QLQL  DLR A+E +QF L+YQP
Sbjct: 397 DQHELLRNADAAMYHAKSAGKNGYSFFDVSMNSNARQQLQLLQDLRLALEQRQFRLHYQP 456

Query: 419 KINGVGDSISGVEALVRWNHPQHGLIGPTEFIGLAERFGLIVHLGDWILDEACRQIAQWQ 478
           K +       G EAL+RW HPQ GL+ P  FIGLAE+ GLI+ +G+W+L EACRQ+ QW 
Sbjct: 457 KFDAQACQPIGAEALLRWEHPQQGLLLPDRFIGLAEKTGLIIPIGEWVLTEACRQMRQWL 516

Query: 479 AQGTQ-MCVAVNLSVMQLREVDFVARVERALLRHNVPASLLLCEITESVAMEDIKATQRT 537
            QG     +AVNLS +Q      V  V RAL ++ +PA+ L  EITE+ AM D  A+   
Sbjct: 517 DQGHHGWRMAVNLSAIQFCHAGLVDSVARALQQNGLPANCLTLEITETTAMHDADASLTV 576

Query: 538 LEGLARVGVFLSIDDFGTGYSSLSHLRKLPARQVKIDRSFVQDLQTKEDARAVIDAVIRL 597
           L+ L+ +GV LSIDDFGTGYSSL +L++LPA ++KIDR FV+DL+   D  A++ A++ L
Sbjct: 577 LQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEQDSDDAAIVSAIVAL 636

Query: 598 AHALGLSVVAEGVENEAQRDILLAMGCDELQGFLFSRPLPA 638
             ALGL +VAEGVE + Q+D L  +GCD LQG+L  +P+PA
Sbjct: 637 GQALGLRIVAEGVETDKQQDFLTRLGCDSLQGYLLGQPVPA 677



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 92  VLVSLLIGLGASAAALVIFKYLGNAHSTYRVAFQLLASVVMGIAICGMHYTGMAAANFPA 151
           VL+SL + + AS  AL +   +  A       +    ++ MGI +  MH+ GM A + P 
Sbjct: 11  VLISLCVAILASYTALDLTGRIATAKGRAACLWMGGGALAMGIGVWSMHFIGMLAFSLPI 70

Query: 152 D 152
           D
Sbjct: 71  D 71