Pairwise Alignments

Query, 653 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 754 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  374 bits (961), Expect = e-108
 Identities = 238/651 (36%), Positives = 361/651 (55%), Gaps = 28/651 (4%)

Query: 4   GIWSMHFVGMLGFSLPISLGFSGGLTLASWVAGVMASGVALWVASEADYGLRRIAIASLA 63
           GIW+MHF+ ML F  P+ + +   LT+ S +  +  + +A+     ++        ++  
Sbjct: 73  GIWAMHFISMLAFRAPVDVHYDVSLTILSLLIALGVAWLAMHSLERSNMRAHYFVPSAGL 132

Query: 64  MAVGICGMHYIGMAALDMAPPIVWHVPTVLVSLLIGLGASAAALVIFKYLGNAHSTYRVA 123
           + +GI  MH++GMAA++      +    +L S  I L  +  AL + +YL N   T   A
Sbjct: 133 IGLGIILMHFVGMAAMETGARQYYQTGLLLASAAIALLTALTALYLARYLRNGSGTLYQA 192

Query: 124 FQLLASVVMGIAICGMHYTGMAAANF--PADSVC-LSSGQ---LYGTGLTAIVGLASGLL 177
            +  AS++M   I   H+T M+A     PAD+   L SG      G G+  I  L SG  
Sbjct: 193 MKYGASLLMAGGIVATHFTAMSAMTLVIPADTALRLPSGDNSLQLGLGIGFITLLISGAS 252

Query: 178 LLGTLFTSILESRLQLVARRLSSSLEEANAELTQANHELQKRAFTDALTGLPNR----VL 233
           +   L    L+S+ +   RR+S  L    ++L QA   LQ+ A  DALT L NR     +
Sbjct: 253 ISAALADKKLQSK-EHDLRRVSVLL----SQLDQARASLQQAAHYDALTNLLNRRGFNQV 307

Query: 234 FEDRLRHALARMNRANQLQVEECIAVLFVDLDGFKPINDSFGHSAGDRILCVAAERLARN 293
           F +RL    A  NR         +AV+F+D+D FK INDS GH AGD +L V A  +   
Sbjct: 308 FAERLVEHQASENR---------LAVMFLDIDHFKRINDSLGHDAGDELLKVIANHIKAA 358

Query: 294 TRESDTVARIGGDEFLLLLEGVHDRAECAEAANRVLRALGEPFNVQGKLLQIACSIGIVL 353
           TR  D VAR GGDEF ++   ++ R E    A R+++ + +P ++ G+ + +  SIGI +
Sbjct: 359 TRNHDLVARFGGDEFCVVTS-LNSRDEARHLAQRIMQRMKDPIDLGGRRMVMTTSIGISI 417

Query: 354 HPEQGEP-DKLVANADAAMYEAKRAGGGNYVMFESHMGADAAKQLQLQSDLRRAV-ELKQ 411
            P+ G   ++L+ +AD A+Y++K  G  +   F   + A A+  LQL+ +LR A+ E + 
Sbjct: 418 FPDDGSTAEELLKHADLALYQSKDNGRNSLNFFNDSLKARASIALQLEEELRLALLEERG 477

Query: 412 FELYYQPKINGVGDSISGVEALVRWNHPQHGLIGPTEFIGLAERFGLIVHLGDWILDEAC 471
             ++YQP  +     ++ +EALVRW HPQHGL+GP  F+G+AE  GLI+ L  W+L  AC
Sbjct: 478 LCVHYQPIFDLRSGQVAKLEALVRWQHPQHGLLGPDRFVGIAEANGLIIDLDLWVLRHAC 537

Query: 472 RQIAQWQAQGT-QMCVAVNLSVMQLREVDFVARVERALLRHNVPASLLLCEITESVAMED 530
             +A  Q  G  ++ V VN S + L   +    VE+AL    +    L  E+TE+  + D
Sbjct: 538 ADLAHLQRHGYGEVQVTVNCSAVTLSHDELPNEVEKALFHAGLAPRHLELEVTENALVGD 597

Query: 531 IKATQRTLEGLARVGVFLSIDDFGTGYSSLSHLRKLPARQVKIDRSFVQDLQTKEDARAV 590
           I+ T   L+ +  +GV LSIDDFGTGYSSL++L++LP   +KIDR+F+QD+   +  R +
Sbjct: 598 IQRTVSLLKRVRALGVALSIDDFGTGYSSLAYLKRLPLDVLKIDRTFLQDVPGSQKDREI 657

Query: 591 IDAVIRLAHALGLSVVAEGVENEAQRDILLAMGCDELQGFLFSRPLPAGDL 641
           + A+I +AH L L VV+EGVE   Q+  L + GCD LQG+L  RP+P  +L
Sbjct: 658 VQAIIAMAHTLHLRVVSEGVETAEQQAFLESHGCDYLQGYLLGRPVPLAEL 708



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 1   MGTGIWSMHFVGMLGFSLPISLGFSGGLTLASWVAGVMASGVALWVASEADYGLRRIAI- 59
           +G GI  MHFVGM          +  GL LAS    ++ +  AL++A     G   +   
Sbjct: 133 IGLGIILMHFVGMAAMETGARQYYQTGLLLASAAIALLTALTALYLARYLRNGSGTLYQA 192

Query: 60  ----ASLAMAVGICGMHYIGMAALDMAPP--IVWHVPTVLVSLLIGLGASAAALVI 109
               ASL MA GI   H+  M+A+ +  P      +P+   SL +GLG     L+I
Sbjct: 193 MKYGASLLMAGGIVATHFTAMSAMTLVIPADTALRLPSGDNSLQLGLGIGFITLLI 248