Pairwise Alignments
Query, 1017 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45
Subject, 1052 a.a., Multidrug resistance protein MdtC from Xanthobacter sp. DMC5
Score = 404 bits (1038), Expect = e-116
Identities = 300/1029 (29%), Positives = 500/1029 (48%), Gaps = 42/1029 (4%)
Query: 11 RRSVLFLVALLAL--AGALAAFRLPVSLFPTVQFPRVSLSLDAGDQPANQMELQVTRPVE 68
RR V+ + +L+L AG A +LPV+ P V FP +++S M V P+E
Sbjct: 8 RRPVMTTLIMLSLVVAGLFAYRQLPVAALPRVDFPTINISASLPGASPETMATSVATPIE 67
Query: 69 EAVRSIAGVTNVRSTTSRGSAEVSVSFDWGTDMAAATLQVNAAVAQIQAQLPPG--TRVA 126
+ +IAG++++ S++++GS ++V FD + AA L V +A++ Q QLP T +
Sbjct: 68 RQLATIAGISSLTSSSTQGSTSITVQFDLNRSIDAAALDVQSALSVAQRQLPDEMTTPPS 127
Query: 127 ARRMDPTVFPIIAYSLTSASLSPTALRDLASYQLRPLLSGIAGVATVQVQGGASEEVRVT 186
R+++P P+I +++S +L +A+ + A + +S + GVA VQ+ G VR+
Sbjct: 128 FRKVNPADAPVILLAISSDTLPLSAVNEYADTLIGQQISQLPGVAQVQIYGSQKYAVRIR 187
Query: 187 ADPRRLQAYGLSMDDLSKALAAGNSLSATGRLEDHYKLYLVLADTRLAGVEDVRQTVVAN 246
DP A +S DD+ +A+ A S + G + + + T A R+ VV
Sbjct: 188 VDPAAAGARNISADDIQRAVEAAASNTPLGIVSGPKQAQTIDMGTPKADASQFRRVVVKA 247
Query: 247 GANGVVRIGDVASVARSTTPEWQRVTADGRDAVLLSIRQQPGSNSVQIAADVKAALDGFA 306
VVR+ ++A V+ E + R AV+L++ +QP +N+VQ+ +V+ L F
Sbjct: 248 RDGSVVRLEEIAVVSDGVENERVASWFNDRRAVVLAVVRQPDANTVQVVDEVRNRLPQFR 307
Query: 307 PQLPKDVHVANWYDQSELVTASASSVRDAILIGVVLAALVLVVFLRNLRVTAIAVVVVPA 366
QLP V + D+S V + + V+ + +VL LV+ +FLRN+R T I + +P
Sbjct: 308 AQLPGSVGIEVLNDRSVSVRDAVADVQKTLFEAIVLVVLVIFLFLRNVRATIIPSLALPL 367
Query: 367 VLAITIVVLQLLGMSFNIMTLGGMAAAVGLVIDDAIVMIEHIERRLAETADSSGGAAGAR 426
+ T + G S N MTL + VG V+DDAIV++E+I R + E +S AA
Sbjct: 368 SIIATFAAMWGFGYSINNMTLLALTLCVGFVVDDAIVVLENIYRHV-EAGESPFRAA--- 423
Query: 427 LGVVDAAMEFLRPLAGSSAATLVIFAPLAFLSGVTGAFFKALSLTMASALAISFLVTWLA 486
+ + E + + + + +F P+ F+ GV G F+ ++T++ A+ +S V+
Sbjct: 424 ---LRGSREIGFTIISMTLSLVAVFIPVLFMGGVVGRVFREFAVTISVAILVSGFVSLTL 480
Query: 487 VPLLAHFLLGRQHRPARDDRVTRWF----KLRYRHWL--------VRCIARPWVLVVCVA 534
P+L R +P + WF + + WL +P++LVV A
Sbjct: 481 TPMLC----ARVMKPVDHTKKPGWFFRVTERMFDSWLNAYRVSLDFVLRRKPFMLVVTFA 536
Query: 535 LLLGAGGFAFRQVGTGFMPSMDEGGFILDYRTPPGTALSETDRLLRQVEAIVRATPEVQT 594
+G + + + GF P D G ++ + +QV +VRA P V
Sbjct: 537 -TIGLSVYLYIVIPKGFFPQEDNGFITGTVEAATDSSFAAMVERQKQVADVVRADPAVD- 594
Query: 595 YSRRTATGLGGGLSETNQGDFFIRLKPGRRRP------VQEVMQDVRNRVEHQVPGVNVE 648
Y TA G G TN G FI LKP P +V+Q +R RV QVPGVNV
Sbjct: 595 YIVSTA-GATGSSRTTNTGRLFIALKPKGNGPGERVGSANDVIQGLRKRVA-QVPGVNVF 652
Query: 649 LAQLMEDLIGDLTAVPQPVEVKLFAADPKLLPGAAEQVAQRIAKVPGLVEVRSGINPAGD 708
+ +G + + Q + L + D + L A+ + QR+A++PGL +V S +
Sbjct: 653 FQPVQNINVGGVASKSQ-YQYTLQSPDTETLYAFAQTMEQRLAQLPGLRDVTSDLQITNP 711
Query: 709 AIAVHVDRVAAAVEGLDPDQVTRALQTAL-AGSVATSYAQETKIVGVRVWTPAGSRATQA 767
+ + +D+ AA G+ Q+ AL T +AT Y + + P R +
Sbjct: 712 QLTIELDKDKAAALGITEQQLRDALYTQFGTRQIATLYTPTNQFAIIAEVQPIFQR-DPS 770
Query: 768 QLDDLPLRAPDGHLVPLRRIATFETLSGQPQITRENLKSMIAVTGRI-EGRDLGSVVQDV 826
L + LR G++VPL +A + G I + + + ++ + G LG V+++
Sbjct: 771 DLGRVYLRTTSGNVVPLETVANIKRTVGPLSIQHQQQQPSVTISFNLAPGTSLGQAVEEI 830
Query: 827 KQTLAAGGALPGGVYYELGGLYQQQQIAFKGLMTVFAAAAALVFLLLLFLYESFAVAASI 886
AA +P V G Q Q + + AA +++++L LYESF +I
Sbjct: 831 -NAAAAEARVPDSVIPGFQGTAQVFQDSLSNQPLLILAAVVVIYIVLGVLYESFIHPITI 889
Query: 887 LCTSLLSVSAVFIGLWLTGIELNISAMMGMTMIIGIVTEVAVFYFSEQRQRHRPGRDLRR 946
L + + L G+EL++ A++G+ M++GIV + A+ +R R G +
Sbjct: 890 LSGLPSAGIGALLTLMAAGMELSVIAIIGIIMLVGIVKKNAIMMIDVALERRRAGAAAQD 949
Query: 947 SLVGAGQFRARPIAMTTLAAILTLLPLALAIGAGSEMQQPLAVAIISGLVVQLPLVLFFM 1006
++ A R RPI MTTLAAI +LP+A+ GAGSE++QPL VA++ GL+V L LF
Sbjct: 950 AIREAALLRFRPIMMTTLAAIFGVLPIAIGAGAGSELRQPLGVAVVGGLLVSQLLTLFIT 1009
Query: 1007 PTLYAWIEK 1015
P +Y ++++
Sbjct: 1010 PVVYLYLDR 1018
Score = 85.1 bits (209), Expect = 2e-20
Identities = 112/512 (21%), Positives = 210/512 (41%), Gaps = 45/512 (8%)
Query: 522 CIARPWVLVVCVALLLGAGGFAFRQVGTGFMPSMDEGGFILDYRTPPGTALSETDRLLRQ 581
CI RP + + + L+ AG FA+RQ+ +P +D + P + +
Sbjct: 6 CIRRPVMTTLIMLSLVVAGLFAYRQLPVAALPRVDFPTINISASLPGASP---------E 56
Query: 582 VEAIVRATPEVQTYSRRTATGLGGGLSETNQGDFFIRLKPGRRRPVQEVMQDVRNRVEHQ 641
A ATP + + T G+ S + QG I ++ R + DV++
Sbjct: 57 TMATSVATPIERQLA--TIAGISSLTSSSTQGSTSITVQFDLNRSIDAAALDVQS----- 109
Query: 642 VPGVNVELAQLMEDLIGDLT---AVPQPVEVKLFAADPKLLPGAAEQ------VAQRIAK 692
++V QL +++ + P V L A LP +A + Q+I++
Sbjct: 110 --ALSVAQRQLPDEMTTPPSFRKVNPADAPVILLAISSDTLPLSAVNEYADTLIGQQISQ 167
Query: 693 VPGLVEVRSGINPAGDAIAVHVDRVAAAVEGLDPDQVTRALQTALAGSVATSYAQETKIV 752
+PG+ +V+ A+ + VD AA + D + RA++ A + + + +
Sbjct: 168 LPGVAQVQI-YGSQKYAVRIRVDPAAAGARNISADDIQRAVEAAASNTPLGIVSGPKQAQ 226
Query: 753 GVRVWTPAGSRATQAQLDDLPLRAPDGHLVPLRRIATFETLSGQPQITR--ENLKSMIAV 810
+ + TP +A +Q + ++A DG +V L IA ++ + ++++
Sbjct: 227 TIDMGTP---KADASQFRRVVVKARDGSVVRLEEIAVVSDGVENERVASWFNDRRAVVLA 283
Query: 811 TGRIEGRDLGSVVQDVKQTLAAGGA-LPGGVYYELGGLYQQQQIAFKGLM-----TVFAA 864
R + VV +V+ L A LPG V E + + ++ + + T+F A
Sbjct: 284 VVRQPDANTVQVVDEVRNRLPQFRAQLPGSVGIE---VLNDRSVSVRDAVADVQKTLFEA 340
Query: 865 AAALVFLLLLFLYESFAVAASILCTSLLSVSAVFIGLWLTGIELNISAMMGMTMIIGIVT 924
+V ++ LFL A L LS+ A F +W G +N ++ +T+ +G V
Sbjct: 341 IVLVVLVIFLFLRNVRATIIPSLALP-LSIIATFAAMWGFGYSINNMTLLALTLCVGFVV 399
Query: 925 EVAVFYFSEQRQRHRPGRD-LRRSLVGAGQFRARPIAMTTLAAILTLLPLALAIGAGSEM 983
+ A+ + G R +L G+ + I+M TL+ + +P+ G +
Sbjct: 400 DDAIVVLENIYRHVEAGESPFRAALRGSREIGFTIISM-TLSLVAVFIPVLFMGGVVGRV 458
Query: 984 QQPLAVAIISGLVVQLPLVLFFMPTLYAWIEK 1015
+ AV I ++V + L P L A + K
Sbjct: 459 FREFAVTISVAILVSGFVSLTLTPMLCARVMK 490