Pairwise Alignments
Query, 1017 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45
Subject, 1048 a.a., cation efflux system protein from Pseudomonas putida KT2440
Score = 400 bits (1028), Expect = e-115
Identities = 297/1031 (28%), Positives = 489/1031 (47%), Gaps = 34/1031 (3%)
Query: 11 RRSVLFLVALLALAGALAAFRLPVSLFPTVQFPRVSLSLDAGDQPANQMELQVTRPVEEA 70
R V+ V L+A G + +LP+ P + +V ++ A + E ++T +E A
Sbjct: 13 RLVVMLAVVLMAAVGIHSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRITFAIETA 72
Query: 71 VRSIAGVTNVRSTTSRGSAEVSVSFDWGTDMAAATLQVNAAVAQIQAQLPPGTRVAARRM 130
+ + G+ RS + G ++V+V FD GTD+ A VN + + QLP G +
Sbjct: 73 MAGLPGLKQTRSLSRSGLSQVTVIFDDGTDIFFARQLVNERLQVAREQLPEGIEAGMGPI 132
Query: 131 DPTVFPIIAYSLTSAS---------LSPTALRDLASYQLRPLLSGIAGVATVQVQGGASE 181
+ I +++ + +PT LR + + ++P L + GVA V GG ++
Sbjct: 133 STGLGEIFLWTVEAQEGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAEVNSIGGHAK 192
Query: 182 EVRVTADPRRLQAYGLSMDDLSKALAAGNSLSATGRLEDHYKLYLVLADTRLAGVEDVRQ 241
+ + +P+RL AY L+++DL AL N+ G +E + + L+ A ++A ED+
Sbjct: 193 QYLIAPEPKRLAAYKLTLNDLIAALERNNANIGAGYIERNGEQLLIRAPGQVASAEDIAN 252
Query: 242 TVVANGANGVVRIGDVASVARSTTPEWQRVTADGRDAVLLSIRQQPGSNSVQIAADVKAA 301
V+++ +R+ VA V T +GR+ VL ++ G NS ++ V A
Sbjct: 253 IVISSVDGTPIRVSHVAQVGLGEELRSGAATENGREVVLGTVFMLIGENSRTVSQAVAAK 312
Query: 302 LDGFAPQLPKDVHVANWYDQSELVTASASSVRDAILIGVVLAALVLVVFLRNLRVTAIAV 361
L LPK V YD++ LV + ++V+ ++ G +L VL +FL N+R I
Sbjct: 313 LVEINRNLPKGVVAVTVYDRTNLVEKAIATVKKNLIEGAILVIAVLFLFLGNIRAALITA 372
Query: 362 VVVPAVLAITIVVLQLLGMSFNIMTLGGMAAAVGLVIDDAIVMIEHIERRLAETADSSGG 421
+V+P + T + +S N+M+LG A G+++D A+V++E+ RRLA G
Sbjct: 373 MVIPLSMLFTFTGMFSNKVSANLMSLG--ALDFGIIVDGAVVIVENAIRRLAHAQQRHGR 430
Query: 422 --AAGARLG-VVDAAMEFLRPLAGSSAATLVIFAPLAFLSGVTGAFFKALSLTMASALAI 478
G R V AA E RPL +V++ P+ L+GV G F ++ T+ AL
Sbjct: 431 MLTRGERFHEVFAAAREARRPLIYGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVMALLG 490
Query: 479 SFLVTWLAVPL-LAHFLLGRQHRPARDDRVTRWFKLRYRHWLVRCIARPWVLVVCVALLL 537
+ +++ VP +A F+ G+ + V R + RY L + R + A L+
Sbjct: 491 AMILSVTFVPAAIALFVTGKVKE--EEGLVMRTARQRYAPVLAWVLGRRKLACAAAAALV 548
Query: 538 GAGGFAFRQVGTGFMPSMDEGGFILDYRTPPGTALSET-DRLLRQVEAIVRATPEVQTYS 596
G ++G+ F+PS+ EG F L PGT+LS++ D R +AI+ PEV+
Sbjct: 549 LLSGVMASRMGSEFIPSLSEGDFALQALRVPGTSLSQSVDMQQRLEQAIIAQVPEVERVF 608
Query: 597 RRTATG-LGGGLSETNQGDFFIRLKPGRR-----RPVQEVMQDVRNRVEHQVPGVNVELA 650
RT T + N D ++ L+P + +P E++ V+ R VPG N EL+
Sbjct: 609 ARTGTAEIASDPMPPNISDAYVMLRPREQWVDPGKPRDELIAQVQ-RAAASVPGSNYELS 667
Query: 651 QLMEDLIGDL-TAVPQPVEVKLFAADPKLLPGAAEQVAQRIAKVPGLVEVRSGINPAGDA 709
Q ++ +L + V V VKLF D ++L A Q+A + VPG EV+
Sbjct: 668 QPIQLRFNELISGVRSDVAVKLFGDDMEVLNRTAAQIAASLQGVPGASEVKVEQTTGLPV 727
Query: 710 IAVHVDRVAAAVEGLDPDQVTRALQTALAGSVATSYAQETKIVGVRVWTPAGSRATQAQL 769
+ + +DR AA GL+ V A+ A+ G A + + + + V R L
Sbjct: 728 LTIDIDRDKAARHGLNVGDVQDAIAIAVGGRTAGTLYEGDRRFDMVVRLSETLRTDVDGL 787
Query: 770 DDLPLRAPDGH--------LVPLRRIATFETLSGQPQITRENLKSMIAVTGRIEGRDLGS 821
L + P +PL ++AT G Q++RE+ K ++ V+ + GRDLGS
Sbjct: 788 ASLLIPVPASAAERAGQIGFIPLSQVATLNLQLGPNQVSREDGKRVVVVSANVRGRDLGS 847
Query: 822 VVQDVKQTLAAGGALPGGVYYELGGLYQQQQIAFKGLMTVFAAAAALVFLLLLFLYESFA 881
VQ+ +Q L +P G + GG ++Q Q A + L V A LV LLL ++ +
Sbjct: 848 FVQEAEQALIDQVQVPPGYWTRWGGQFEQLQSAAERLQVVVPVALLLVMALLLMMFNNLR 907
Query: 882 VAASILCTSLLSVSAVFIGLWLTGIELNISAMMGMTMIIGIVTEVAVFYFSEQRQRHRPG 941
+ +++ + LW I L+ISA +G + G+ + + R G
Sbjct: 908 DGLLVFTGIPFALTGGVLALWARDIPLSISAGVGFIALSGVAVLNGLVMIAFIRGLREEG 967
Query: 942 RDLRRSLVGAGQFRARPIAMTTLAAILTLLPLALAIGAGSEMQQPLAVAIISGLVVQLPL 1001
R LR ++ R RP+ MT L A L +P+ALA G G+E+Q+PLA +I G++ L
Sbjct: 968 RTLRAAVEEGALTRLRPVLMTALVASLGFIPMALATGTGAEVQRPLATVVIGGILSSTAL 1027
Query: 1002 VLFFMPTLYAW 1012
L +P LY W
Sbjct: 1028 TLLVLPALYQW 1038
Score = 62.4 bits (150), Expect = 2e-13
Identities = 105/530 (19%), Positives = 210/530 (39%), Gaps = 49/530 (9%)
Query: 5 AWLSAHRRSVLFLVALLALAGALAAFRLPVSLFPTVQFPRVSLSLDAGDQPANQMELQVT 64
AW+ R+ A L L + A R+ P++ +L + + +
Sbjct: 531 AWVLGRRKLACAAAAALVLLSGVMASRMGSEFIPSLSEGDFALQALRVPGTSLSQSVDMQ 590
Query: 65 RPVEEAVRSIAGVTNVRSTTSR-GSAEVSVSFDWGTDMAAATLQVNAAVAQIQAQLPPGT 123
+ +E+A+ IA V V +R G+AE++ S +++ A + + + P
Sbjct: 591 QRLEQAI--IAQVPEVERVFARTGTAEIA-SDPMPPNISDAYVMLRPREQWVDPGKPRDE 647
Query: 124 RVAARRMDPTVFPIIAYSLT-----------SASLSPTALR---------DLASYQLRPL 163
+A + P Y L+ S S A++ + + Q+
Sbjct: 648 LIAQVQRAAASVPGSNYELSQPIQLRFNELISGVRSDVAVKLFGDDMEVLNRTAAQIAAS 707
Query: 164 LSGIAGVATVQVQGGASEEV-RVTADPRRLQAYGLSMDDLSKALAAGNSLSATGRLED-- 220
L G+ G + V+V+ V + D + +GL++ D+ A+A G L +
Sbjct: 708 LQGVPGASEVKVEQTTGLPVLTIDIDRDKAARHGLNVGDVQDAIAIAVGGRTAGTLYEGD 767
Query: 221 -HYKLYLVLADTRLAGVEDVRQTVVANGANGVVRIGDVASVARSTTPEW-------QRVT 272
+ + + L++T V+ + ++ A+ R G + + S Q
Sbjct: 768 RRFDMVVRLSETLRTDVDGLASLLIPVPASAAERAGQIGFIPLSQVATLNLQLGPNQVSR 827
Query: 273 ADGRDAVLLS--IRQQPGSNSVQIAADVKAALDGFAPQLPKDVHVANWYDQSELVTASAS 330
DG+ V++S +R + + VQ A +A +D Q+P + W Q E + ++A
Sbjct: 828 EDGKRVVVVSANVRGRDLGSFVQEAE--QALIDQV--QVPPG-YWTRWGGQFEQLQSAAE 882
Query: 331 SVRDAILIGVVLAALVLVVFLRNLRVTAIAVVVVPAVLAITIVVLQLLGMSFNIMTLGGM 390
++ + + ++L +L++ NLR + +P L ++ L + +I G
Sbjct: 883 RLQVVVPVALLLVMALLLMMFNNLRDGLLVFTGIPFALTGGVLALWARDIPLSISAGVGF 942
Query: 391 AAAVGLVIDDAIVMIEHIERRLAETADSSGGAAGARLGVVDAAMEFLRPLAGSSAATLVI 450
A G+ + + +VMI I R L E + R V + A+ LRP+ ++ +
Sbjct: 943 IALSGVAVLNGLVMIAFI-RGLREEGRT------LRAAVEEGALTRLRPVLMTALVASLG 995
Query: 451 FAPLAFLSGVTGAFFKALSLTMASALAISFLVTWLAVPLLAHFLLGRQHR 500
F P+A +G + L+ + + S +T L +P L + R +
Sbjct: 996 FIPMALATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYQWAYRRDEQ 1045