Pairwise Alignments

Query, 1017 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1053 a.a., cation efflux system protein from Pseudomonas putida KT2440

 Score =  397 bits (1021), Expect = e-114
 Identities = 287/1031 (27%), Positives = 492/1031 (47%), Gaps = 34/1031 (3%)

Query: 14   VLFLVALLALAGALAAFRLPVSLFPTVQFPRVSLSLDAGDQPANQMELQVTRPVEEAVRS 73
            V+  V ++A  G  +  +LP+   P +   +V ++  A      + E ++T PVE A+  
Sbjct: 16   VMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQRITFPVETAMAG 75

Query: 74   IAGVTNVRSTTSRGSAEVSVSFDWGTDMAAATLQVNAAVAQIQAQLPPGTRVAARRMDPT 133
            + G+   RS +  G ++V+V F  GTD+  A   +N  +   + QLP G       +   
Sbjct: 76   LPGLQQTRSLSRSGLSQVTVIFKDGTDIFFARQLINERLQVAKEQLPEGVEAVMGPVSTG 135

Query: 134  VFPIIAYSLTSAS---------LSPTALRDLASYQLRPLLSGIAGVATVQVQGGASEEVR 184
            +  I  +++ +            +PT LR +  + ++P L  + GVA +   GG +++  
Sbjct: 136  LGEIFLWTVEAEDGAVKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAEINTIGGYAKQFL 195

Query: 185  VTADPRRLQAYGLSMDDLSKALAAGNSLSATGRLEDHYKLYLVLADTRLAGVEDVRQTVV 244
            V  DP+RL  Y L+++DL  AL + N+    G +E + +  L+ A  ++  +ED+   V+
Sbjct: 196  VAPDPKRLATYKLTLNDLVAALESNNANVGAGYIERNGEQLLIRAPGQVGNIEDIANIVI 255

Query: 245  ANGANGVVRIGDVASVARSTTPEWQRVTADGRDAVLLSIRQQPGSNSVQIAADVKAALDG 304
             +     +RI  VA V+          T +GR+ VL ++    G NS  ++  V A L  
Sbjct: 256  TSVDGAPIRISSVADVSIGKELRTGAATENGREVVLGTVFMLIGENSRTVSQAVAAKLAD 315

Query: 305  FAPQLPKDVHVANWYDQSELVTASASSVRDAILIGVVLAALVLVVFLRNLRVTAIAVVVV 364
                LPK V     YD++ LV  + ++V+  ++ G +L   +L +FL N+R   I  +V+
Sbjct: 316  INRTLPKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILVIAILFLFLGNIRAALITAMVI 375

Query: 365  PAVLAITIVVLQLLGMSFNIMTLGGMAAAVGLVIDDAIVMIEHIERRLAETADSSGGAAG 424
            P  +  T   +    +S N+M+LG  A   G+++D A+V++E+  RRLA      G    
Sbjct: 376  PLSMLFTFTGMFNNKVSANLMSLG--ALDFGIIVDGAVVIVENAIRRLAHAQHKHGRMLT 433

Query: 425  ARLG---VVDAAMEFLRPLAGSSAATLVIFAPLAFLSGVTGAFFKALSLTMASALAISFL 481
                   V  AA E  RPL       +V++ P+  L+GV G  F  ++ T+  AL  + +
Sbjct: 434  KTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVMALLGAMV 493

Query: 482  VTWLAVPL-LAHFLLGRQHRPARDDRVTRWFKLRYRHWLVRCIARPWVLVVCVALLLGAG 540
            ++   VP  +A F+ G+      +  V R  +LRY   L   +    +       L+   
Sbjct: 494  LSVTFVPAAIAMFVTGKVKE--EEGVVMRTARLRYEPVLQWVLGHRNIAFSAAVALVVLS 551

Query: 541  GFAFRQVGTGFMPSMDEGGFILDYRTPPGTALSETDRLLRQVE-AIVRATPEVQTYSRRT 599
            G    ++G+ F+PS+ EG F +     PGT+L+++  + +++E A++   PEV+    R+
Sbjct: 552  GLLASRMGSEFIPSLSEGDFAMQAMRVPGTSLTQSVEMQQRLEKAVIAQVPEVERMFARS 611

Query: 600  ATG-LGGGLSETNQGDFFIRLKP-----GRRRPVQEVMQDVRNRVEHQVPGVNVELAQLM 653
             T  +       N  D +I LKP       ++P  E++ +V+ +    VPG N EL+Q +
Sbjct: 612  GTAEIASDPMPPNASDAYIMLKPQDQWPNPKKPRDELIAEVQ-KAAAGVPGSNYELSQPI 670

Query: 654  EDLIGDL-TAVPQPVEVKLFAADPKLLPGAAEQVAQRIAKVPGLVEVRSGINPAGDAIAV 712
            +    +L + V   V VK+F  D  +L   A ++A  +  VPG  EV+         + +
Sbjct: 671  QLRFNELISGVRSDVAVKVFGDDMDVLNNTANKIAAALKAVPGSSEVKVEQTSGLPVLTI 730

Query: 713  HVDRVAAAVEGLDPDQVTRALQTALAGSVATSYAQETKIVGVRVWTPAGSRATQAQLDDL 772
            ++DR  AA  GL+   V  ++  A+ G  A +  +  +   + V  P   R   A +  L
Sbjct: 731  NIDREKAARYGLNIADVQNSIAIAVGGRQAGTLYEGDRRFDMVVRLPETVRTDVAGMSSL 790

Query: 773  ----PLRAPDGH----LVPLRRIATFETLSGQPQITRENLKSMIAVTGRIEGRDLGSVVQ 824
                P  A  G      +PL ++A  +   G  QI+REN K ++ V+  + GRDLGS V+
Sbjct: 791  LIPVPANAAQGANQIGFIPLSQVANLDLQLGPNQISRENGKRLVIVSANVRGRDLGSFVE 850

Query: 825  DVKQTLAAGGALPGGVYYELGGLYQQQQIAFKGLMTVFAAAAALVFLLLLFLYESFAVAA 884
            +   +L     +P G +   GG ++Q Q A K L  V   A  LV  LL  ++ +     
Sbjct: 851  EATASLDKKVQIPAGYWTTWGGQFEQLQSAAKRLQIVVPVALLLVMTLLFLMFNNLKDGM 910

Query: 885  SILCTSLLSVSAVFIGLWLTGIELNISAMMGMTMIIGIVTEVAVFYFSEQRQRHRPGRDL 944
             +      +++   + LWL  I L+ISA +G   + G+     +   +  R     GR L
Sbjct: 911  LVFTGIPFALTGGVVALWLRDIPLSISAGVGFIALSGVAVLNGLVMIAFIRGLREEGRTL 970

Query: 945  RRSLVGAGQFRARPIAMTTLAAILTLLPLALAIGAGSEMQQPLAVAIISGLVVQLPLVLF 1004
            R+++      R RP+ MT L A L  +P+ALA G G+E+Q+PLA  +I G++    L L 
Sbjct: 971  RQAVDEGALTRLRPVLMTALVASLGFIPMALATGTGAEVQRPLATVVIGGILSSTALTLL 1030

Query: 1005 FMPTLYAWIEK 1015
             +P LY W  +
Sbjct: 1031 VLPALYHWAHR 1041