Pairwise Alignments

Query, 681 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  304 bits (779), Expect = 8e-87
 Identities = 207/645 (32%), Positives = 321/645 (49%), Gaps = 49/645 (7%)

Query: 22  LGGEPALEPVRIEGDEGLSRLFRYTLTLATPEQSGYSGRQAANVAIKQLVGEVLTVHIRL 81
           L G    E V  E DE +S  FR  L L + E          +V   QL+ + +   +  
Sbjct: 14  LVGRSEFEVVSFELDEAISSPFRLQLELVSFED---------DVDFAQLLDKPVLFTLWQ 64

Query: 82  DGRPGAGGSQRHISGLVTRVRFLRLENRRALYEAVIEPWLTLATRTNDFRIFQNQTVLAI 141
             RP      R++ GLV+          R  Y A++EP L  A   +++RIFQ +TV  I
Sbjct: 65  GERP-----LRYVHGLVSTFSQGETGFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQI 119

Query: 142 LSQTLGKYDF-PFEICASQNYPPREFQVQYGESDHDFMARLMHEWGLYYYFEHAEGAHKL 200
           L   L +     +E+     +  REF VQ GE+D DFMARL  E G+ Y F+H    H L
Sbjct: 120 LEIMLKRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLL 179

Query: 201 VVVDDMAAHKPFANAAYETIP----FHAAEDTVREEHC--------DSFNAC-------E 241
           ++ D + A    +  A +T      FH   D V  +          D    C       E
Sbjct: 180 IITDRLLALGQISRGAIKTDDEDEGFH--NDDVGPDQVLYRSVGGGDQARPCLRRLRYSE 237

Query: 242 ALQSGRWVTSDFDFTRPKADLQQVSAMPRKTAQN-TLERYGWPGDYAVESEGEQLVRTRM 300
            +++ R V  D+ FT P+   +  +     T Q+   ER+ +PG Y  ++ G     TR+
Sbjct: 238 QVRTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRL 297

Query: 301 EEVGSQGERASGSGNLRAVVPGCLITLERHPQSESNRQYLVTDAR------LHMQEPGEA 354
             +      A   G+   + PG   TL  HP+ + N  +              +QE  EA
Sbjct: 298 TALRHDARIAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQE--EA 355

Query: 355 SGQEVFECRVDFDVISSGKVFRAPAPNAPRPRTSGPQTAIVTGPAGREIWTDQYGRVKLS 414
           +  +         ++  G+    PAP  P+PR  GP  A V GP G EI+ DQ+GRVK+S
Sbjct: 356 ADSQQGTRYKQEALLVPGRTEWRPAP-LPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVS 414

Query: 415 FHWNRYCTKDENSSCWVRVSSPWAGTNFGGIQIPRIGQEVIVDFENGDPDRPIVTGRVYN 474
           F W+R    +E SSCWVRVS  WAG ++G + IPRIGQ+VI+ + N DPD+P++TGR Y 
Sbjct: 415 FPWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYC 474

Query: 475 ADNMPPWTLPDNATQSGLLTRSSEGATDANANALRFEDKKGQEQVWLHAERNQDIEVERD 534
            + +PP+ LP++ T+  + +++ +G      N LRFED+ G+++V++HAER+Q+  V+ D
Sbjct: 475 GNQLPPYDLPEHKTRMTIKSQTHKG---EGFNELRFEDELGRQEVFIHAERDQNNIVKHD 531

Query: 535 ETHWVGHDRSKTIDHDETVHVKHDRTETVGHDETITIGNNRMETIKANELLTVLQNMNRF 594
           ET  VG+DR++ ++ DET+ +  DR E +  DE++ IG NR+  I  ++ L++ +N    
Sbjct: 532 ETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRIT 591

Query: 595 VALTSSEEVGIAKTSLVGLTQTVAVGKSKNETIGEDFSLDVGEKL 639
                 E+VG  +  +     TV +G  + + +    +L  GE +
Sbjct: 592 TGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGEAI 636



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 525 RNQDIEVERDETHWVGHDRSKTIDHDETVHVKHDRTETVGHDETITIGNNRMETIKANEL 584
           RN  I   +D    VG+ R      + TV       E  GH E +  G++ ++T +A   
Sbjct: 586 RNHRITTGKDRIEQVGNHRQDITKANHTV-------EIGGHREQVVAGHSTLQTGEAIRH 638

Query: 585 LTVLQNMNRFVALTSSEEVGIAKTSLVGLT 614
            T + ++    +LT     G+ +    G+T
Sbjct: 639 TTKVYDIQVSESLTIRSPAGLLRVDGAGIT 668