Pairwise Alignments

Query, 160 a.a., T6SS component Hcp from Variovorax sp. SCN45

Subject, 162 a.a., Hcp1 family type VI secretion system effector from Pseudomonas simiae WCS417

 Score =  130 bits (326), Expect = 1e-35
 Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 2/159 (1%)

Query: 1   MAVDMFMRVEGANGESKDSNHKEWSDIKSFAWGATQPGNMVSGGGGGVGKASFNDLQVIA 60
           MAVD+F+++    GES D  HK+  D+ +++WG  Q GNM  GGGGG GK +  DL +  
Sbjct: 1   MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMAQSGNMHVGGGGGAGKVNIQDLSLTK 60

Query: 61  RIDKAAPSVLKNCASGKHLSKVEVSVCKAGG-SQIEYTRVTLEEVLVTSVQYTAEQGSDA 119
            +DKA+P+++ +CASGKH+ KV+++V KAGG SQ+EY  + LEEVLVTS+        D 
Sbjct: 61  YVDKASPNLMMHCASGKHIDKVKLTVRKAGGESQVEYMVINLEEVLVTSLSTGGSGTDDR 120

Query: 120 VFVQYAFQAAKVKQQYWEQTDKGGK-GAETVLAWNIKEN 157
           +        A+V   Y  Q   G K G      WNI+ N
Sbjct: 121 LTENVTLNFAQVMVDYQPQKADGTKDGGAIKFGWNIRSN 159