Pairwise Alignments

Query, 1057 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  237 bits (605), Expect = 2e-66
 Identities = 151/448 (33%), Positives = 225/448 (50%), Gaps = 31/448 (6%)

Query: 91  YEATLRPWLWYATRRSDFKIFQFKTAPQILQEVLAPYGFA-IDARLSGNYRTWDYCVQYS 149
           Y A + P L  A  RS+++IFQ KT PQIL+ +    G    + + S  ++  ++CVQ  
Sbjct: 90  YHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSSAQHQVREFCVQAG 149

Query: 150 ESDFNFVSRLMEQEGIYYFFSHAQGSHQLVLCD-----GADSHTPVPS------------ 192
           E+D +F+ RL  +EG  Y F H    H L++ D     G  S   + +            
Sbjct: 150 ETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAEDDEALWLDEDD 209

Query: 193 -GPVKVPYHAGVLAAQILEQDFIDSWSHSEDIASGNFAADDYDFRKPNAEIDTVRQQPAG 251
            GP KV YHA     Q   +  +    + E + +      DY F  P A     + Q +G
Sbjct: 210 VGPDKVLYHASSGGDQA--RACLRRLRYCEQVRTARQVQRDYTFTNP-AYRQEHKAQTSG 266

Query: 252 --HSRDDFEIYDWPGGYTELGDGENYARLRLEQLAGRRELVSAEGNLRHMAPGYLFELAR 309
             H   D+E +D+PG Y     G+ +   RL  L     L   +G+   +  G  F L  
Sbjct: 267 VTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVRLQTGLSFTLVG 326

Query: 310 HPNAEDNRRYLIEAVTYDFQENALRVAGAADAAYSESTSSTSYRQTFEVLPDSAPFRPAR 369
           HP  + N  + + ++ ++  +       AA A        T Y     ++   A +RPA 
Sbjct: 327 HPREDLNVHWRVISLCHEGTQLTSLQEEAAGAE-----QGTRYVNDALLVQGMAEWRPAP 381

Query: 370 VTPRPRTTGPQTAVVVGPAGEEIHTDEYGRIKVQFHWDRYGRRDENSSCWIRVSQTWAGS 429
           +  +PR  GP  A VVGP GEEI+ DE+GR+KV F WDR  + +E SSCW+ VSQ WAG 
Sbjct: 382 MA-KPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGG 440

Query: 430 NYGAMHIPRIGQEVIVDFLNGDPDYPIVTGCVYNAAQMPPWELPRHKTQTGFQTNWSKGG 489
           ++G+M IPRIGQ+VIV ++NGDPD P++TG  Y   Q+PP++LP HKT+   ++   KG 
Sbjct: 441 SWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGD 500

Query: 490 GGKHMLRFEDSRGTEHIELSTDHGNTHL 517
           G    LRFED  G + + +  +    ++
Sbjct: 501 GFNE-LRFEDELGRQEVFIHAERDQNNV 527



 Score = 26.6 bits (57), Expect = 0.007
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 684 VLSSGQSVSVRATSAMTLTTGAQLTQLVTGGMLTQVSEGGQVNVVSGGDIVSHASAGAVN 743
           V S G   S+    A+++  G + T+ V      QV  GGQ+ V +  D+   +  G V+
Sbjct: 573 VESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQV--GGQLRVDADEDVSITSHHGHVH 630

Query: 744 LVSKTDASMT 753
           + S+T  +++
Sbjct: 631 IDSRTSLTLS 640