Pairwise Alignments
Query, 1485 a.a., T6SS PAAR-repeat protein / RhaS protein from Variovorax sp. SCN45
Subject, 1530 a.a., putative RHS family protein from Pseudomonas putida KT2440
Score = 589 bits (1519), Expect = e-172
Identities = 487/1563 (31%), Positives = 685/1563 (43%), Gaps = 257/1563 (16%)
Query: 6 AARLHDPIAHTNAHARFWAKFAGGLI---GGIAVGFAVGVAAAAVVGTGGLAGPLVAGAV 62
AAR+ D I H + A + A +I AV A+ +A V TGG AG VA A
Sbjct: 7 AARMGDAILHPSLAAEMISAVAEAVIYAAATAAVAAAISLAVVGTVATGGAAG--VAIAA 64
Query: 63 VVGARMAGGYLGASLGE--SIADALVP---------ETLTVTGMITSGSSDVFIDSKAI- 110
V G + G S+GE ++ DA+ ++ G I SGS++V I+S+
Sbjct: 65 VAGVAV-GAVSTLSVGEDQTVGDAISSFCDSLGNSVDSPDPYGKIESGSTNVLINSEPAA 123
Query: 111 -----------GAARASPEMPM-------------------------------------- 121
GAA E P
Sbjct: 124 RAAGITGPPGGGAADTEQEEPSILENVGSMAMAAVPYLVPFVGLGMAIRDIFNPPVTTPA 183
Query: 122 ---------DTVSCKKDSP--QILLAEGAETVFVNMGVASRKDDHTECGAKVSEG---SP 167
D +SC + P +A+G++ VF+N A+R D T C A + SP
Sbjct: 184 NPGSEPAEGDKISCSRHPPLPDTFIAQGSDKVFINGQPAARSGDKTTCDATIDVNENVSP 243
Query: 168 TVFIGGPTARVREVADEVPLISKVLVTIFNLVMIYRGLRCLPKLARQGKNALPCLIEGAV 227
V IGG TA VR++ + I+ I +++ R R I+G
Sbjct: 244 NVRIGGGTATVRDIRNGKSKIAMFTGIIAGMLISRRFGR----------------IKGC- 286
Query: 228 GLGMGIHGLVSSFGNPVHAATGGKFLGGESELDFTLPGPLPIAWQRFYSSHDLRRDGALG 287
+ GNPV ATG K G ++DF LPG L I W R Y S D+R DG LG
Sbjct: 287 -----------TLGNPVAVATGSKLQEGPEDIDFNLPGLLAIQWARRYDSRDMRSDGLLG 335
Query: 288 QGWSLPYAMELRLGSDEESQPIVTLIDEQRRPMVLPGIEPGTRQYSLRDGLDLCRTEGGH 347
GWS+PY +EL + + ID + L + G S DGL + E G
Sbjct: 336 MGWSVPYEVELARVPHPQGGTLWIYIDNDGNRLELGRLSAGDAFISAVDGLAFFQLEDGQ 395
Query: 348 YFIH-VPGGLFFMFAPPAEGEAHAQTLKLARIEDRNGNFIDLRHDALGRLAELTDSTGR- 405
+ + GL+ +F + + +L R+ DRN N +DL +D GRL L D G+
Sbjct: 396 TVVEDINEGLYRVF---DTDPLNPKRSRLIRLGDRNLNCLDLLYDEQGRLKALYDKYGQT 452
Query: 406 LLALDYAGE-----SRQLRAVRLAAGAPG-ELPGVLVAYRHDSEGRLLDVTDRNGAVARR 459
++ L YA S R G P E +LV+YR+ G+L +V D RR
Sbjct: 453 VVQLHYAARHPQRVSEVSRVFLKNGGTPTVERSELLVSYRYTDNGQLHEVLDATDQRVRR 512
Query: 460 FGYDAQGLMNFHADAAGLECRYEWQGTA---------------------------GDAHV 492
F Y +G +N H A+G YEW A + V
Sbjct: 513 FTYTPEGYLNSHQLASGAVREYEWARFAIPETRPTPKRLDGTPYRLPPLLEPQPDHEWRV 572
Query: 493 ARHWTNDGESYTVRRMPPAADDALALGQTLVVDQLGREFAWHWNADLQVTDYADAAGRQW 552
RHW +DGE Y + L G+TLV D LGR ++W +V + D G W
Sbjct: 573 IRHWGSDGEEYRF-------EYNLEAGETLVTDNLGRRDHYYWGPLYEVYKHIDPQGNCW 625
Query: 553 HAEYNELRQLVAITEPGGATTRCTYDPMGFMSSRTDALGRTQSTGW-TEFGEPWRETLAD 611
AE QL+ +P G R +YD +G + D LGR++ + + P + T
Sbjct: 626 LAEV-IAGQLIKRIDPQGGEWRYSYDDIGRLIETRDPLGRSEHIKYLRHWALPIQVTDTA 684
Query: 612 GSTWTYAYSDQGNLVRETDPLGRTTEYAYDRRGLPIVVTDGKGGTNRMAWNECAQLVSLT 671
G T Y Y GNL+ + DPLGR T+Y YD G VTD + ++WN C QL+S
Sbjct: 685 GRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVTQVTDALEKSKYLSWNTCGQLLSYR 744
Query: 672 DCSGKTTRYTYDGWCHLQTVTDAAGQRTRLTHDAMGRLLSVSLPDQSHQSFRRDAAGRIV 731
DCS T Y YD L+ +A G+ T +DA G L+ PD + D AG++
Sbjct: 745 DCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVAGQLT 804
Query: 732 AATDALSRSTQFAFGLRGQPLTRQDAEGRRIAWHYDSAQRLQSLVNENGLHFEFIRDTAD 791
D ++ QF + G+ + R DA G + + YD+ RL L NEN + F D D
Sbjct: 805 RYIDPAQKTLQFRYDPSGRLVERTDAMGYSVKFRYDAYGRLLQLTNENDESYRFGWDELD 864
Query: 792 RVVEERRVGGTRVQVEYDANGWPVCITHVPGIGDEDLALHDGTGPRPAASRPLRTELLRD 851
R+V ++ + G+ Y+ + +THVP DE L D P + +R + RD
Sbjct: 865 RLVAQKDLDGSGRLYAYNVLDEVIRLTHVPS-PDEQPPLSDNA--PPTRTTAIRHDFERD 921
Query: 852 AVGRLVAKRTGSHHYRYTYDLLDRLTEAVKLEAPRPGTRDEPRALHRTVFAYDKLGRLIE 911
A+GRLV+KRT Y YD D L L + E + L + YD G+L+
Sbjct: 922 AIGRLVSKRTEDGTTDYRYDAADNL-----LSITFTDNKGEKQQLD---YTYDANGQLLS 973
Query: 912 ETAIDETTGETHTLRHAHDELGNRTQTVLPAIASQPGVQRALNYLYYGSGHLHQVNLSHQ 971
E T L++ +DELGN VLP QR LN+LYYGSGHLHQ+NL+
Sbjct: 974 E------TNSAGLLQYRYDELGNLQTLVLPD-------QRELNHLYYGSGHLHQINLN-- 1018
Query: 972 HGNAPEVHQLISDIERDDLHREVARSQGALHTRFVLDPLGR------------------- 1012
++ISD ERD +H EV R+QG L TR D GR
Sbjct: 1019 -------GRVISDFERDAVHDEVLRTQGKLVTRTRYDTSGRLAGKAIHYRDAPAEVLPLL 1071
Query: 1013 -RAASWCRAGGLDTAFTTQDPSWRQAIDSAGTPGARLLDGLMKEYSYDPVGELRQSRHSL 1071
+A + + L TQ + R+ + +A L+ ++ + P S H+
Sbjct: 1072 DKAYRYDASDNLIAEVLTQ--TQRRGMSNAANDENANLEQIIGRFLDLPHTGKTYSGHNR 1129
Query: 1072 QGTTAHRFDATGRIEQTVRGAAAANSERFAYDPAGNLLDASSTAPGHVRDNLVRVFEDKR 1131
G + + + Q+ A E F YD AGNL D G ++ N V V++DKR
Sbjct: 1130 YGYDLN--EQLQTVHQSRPNWQATQVEDFKYDKAGNLFDGPK-LNGLIKHNRVLVYQDKR 1186
Query: 1132 YSYDGHGRLVRKRAGRHTDQRFEWDEESRLVAVHTTRRPGTPEATTQLTRFDYDAMGRRV 1191
Y YD GRL KR G + Q FE+D E RLV V R + F YD +GRR+
Sbjct: 1187 YRYDRFGRLCEKRIGSNWVQYFEYDAEQRLVCVEQYR-----SGERERVVFAYDPLGRRI 1241
Query: 1192 AKH-------DAFGSTRFIWEGMRLIEERRGSQVVSYVYEP-GGHVLMARLDAKAEPAEA 1243
+K + F W+G RL++E + YVY + +AR+D K
Sbjct: 1242 SKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLASLYVYATVESYDPLARVDGK------ 1295
Query: 1244 SATAQVFHFHNDTAGLPEELSNTEGQLCWRASYRTWGATVTEQWEVTALNGRAVASTDTV 1303
+ + +FH G PE+L++++G WR+ + WG + E W + NGR
Sbjct: 1296 PGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKIINE-WH-SQQNGR-------- 1345
Query: 1304 PQAIEQNLRFQGQYLDRDTGLHYNTFRFYDPDIGRFIGPDPIGLMGGSNLHQYAPNPSRW 1363
EQNLR QGQY+DR+TGLH+N FRFYDPDIGRF DP+G+ GG NL+ YAPN +
Sbjct: 1346 ----EQNLRNQGQYIDRETGLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYSYAPNIVNY 1401
Query: 1364 IDPLGLSYCAFGNASKPRAP-RPGKDIAVDADGMVKSQA-------GKQFPEGASTTVDP 1415
DPLGL C P RP + G++ A G ++P+G+ T V
Sbjct: 1402 SDPLGL--CPENVKEYDITPYRPSNSPLENHHGILDIWAAQNVPSYGGKYPKGSPTIVLS 1459
Query: 1416 TKS 1418
+K+
Sbjct: 1460 SKN 1462