Pairwise Alignments

Query, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

Subject, 230 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  118 bits (296), Expect = 9e-32
 Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 9/224 (4%)

Query: 12  FGTRRVCAGLVQQGHVTIAGQAVTDPFADLDPDGLLYTVQGTPWAYHEKAYLMLHKPAGT 71
           F  ++V   LV+Q  V++ G AV+DP  ++     +        A     Y MLHKP G 
Sbjct: 13  FNRKQVRLLLVEQ-RVSVDGVAVSDPHHEVRAFSRVCVDDEVLQAGKPARYFMLHKPQGC 71

Query: 72  ECSQKPSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLTDDGQFIHKMGS 131
             +     +P++  LL  P +          +   GRLD +TTGL+L+T+DGQ+  ++  
Sbjct: 72  VSATADPQHPTVLDLLDEPDK--------DELHIAGRLDFNTTGLMLITNDGQWSRRLTQ 123

Query: 132 PKHHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDPKPVRAAACESDSPLHLRLTLTEGKY 191
           P+  +PKVY V  +  +     A    G+    +    + A      P   RL++ EG+Y
Sbjct: 124 PQTKLPKVYLVETEQDIGSDYAATFARGLYFAFEDLTTQPAELVLLGPRTARLSIIEGRY 183

Query: 192 HQVKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAEEV 235
           HQVKRM     N+V GLHR R+G L L   LAPG++R LT +E+
Sbjct: 184 HQVKRMFGHFDNKVVGLHRERMGPLVLDAALAPGEYRALTDDEI 227