Pairwise Alignments

Query, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

Subject, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

 Score = 99.0 bits (245), Expect = 1e-25
 Identities = 76/247 (30%), Positives = 118/247 (47%), Gaps = 19/247 (7%)

Query: 3   LQDILYTQGFGTRRVCAGLVQQGHVTIAGQAVT-----DPFADLDPDGLLYTVQGTPWAY 57
           LQ +L   G G+RR     + QG + + G   T     D    +  DG L  ++    A 
Sbjct: 19  LQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHDAIAVDGKL--IKREEAAE 76

Query: 58  HEKAYLMLHKPAGTECSQK-PSTYPSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGL 116
             +  +M +KP G  C++  P   P+++  LP     RP +G       IGRLD +TTGL
Sbjct: 77  ATRRVIMYNKPDGEICTRDDPEGRPTVFDRLP-----RPKEGRWIN---IGRLDINTTGL 128

Query: 117 LLLTDDGQFIHKMGSPKHHVPKVYEVTAKHPVDEAQIAKLLAGVVLDDDP---KPVRAAA 173
           LL T DG+  +++  P + + + Y V  +  VD+  I +L AGV+L+D P     ++ A 
Sbjct: 129 LLFTTDGELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAKFTDIQKAP 188

Query: 174 CESDSPLHLRLTLTEGKYHQVKRMLAAVGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAE 233
                       + EG+  +V+R+  + G  V  L R R G + L  DL  G+WR +T  
Sbjct: 189 GGEGFNHWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREMTQG 248

Query: 234 EVAALRA 240
           E+  L A
Sbjct: 249 EIDILAA 255