Pairwise Alignments

Query, 249 a.a., SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) from Variovorax sp. SCN45

Subject, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

 Score =  125 bits (313), Expect = 1e-33
 Identities = 74/218 (33%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 21  LVQQGHVTIAGQAVTDPFADLDPDGLLYTVQGTPWAYHEKAYLMLHKPAGTECSQKPSTY 80
           ++ Q  V + GQ V+DP  D+     +   +    A     YLML+KP G   +     +
Sbjct: 21  MLAQRRVRVDGQVVSDPLTDVREFSRVELDEQLLQAGRPARYLMLYKPTGCVSATHDPQH 80

Query: 81  PSIYTLLPSPLRLRPNKGAVQGVQAIGRLDQDTTGLLLLTDDGQFIHKMGSPKHHVPKVY 140
            ++  LLP+ LR          +   GRLD +TTGL++LT+DGQ+  ++  P   +PK Y
Sbjct: 81  RTVLDLLPAALR--------DDLHIAGRLDFNTTGLMILTNDGQWSRRLTQPATKLPKHY 132

Query: 141 EVTAKHPVDEAQIAKLLAGVVLDDDPKPVRAAACESDSPLHLRLTLTEGKYHQVKRMLAA 200
            V  +  + E  +AK   G     +    + A  +   P   RL + EG+YHQVKRM   
Sbjct: 133 LVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILGPHRARLAIVEGRYHQVKRMFGH 192

Query: 201 VGNRVEGLHRSRIGDLALPEDLAPGQWRWLTAEEVAAL 238
             N+V GLHR  +G + L   LAPG++R LTA E+A +
Sbjct: 193 FNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEIATV 230