Pairwise Alignments

Query, 316 a.a., Surface antigen from Variovorax sp. SCN45

Subject, 329 a.a., putative Outer membrane protein from Pseudomonas putida KT2440

 Score = 64.7 bits (156), Expect = 3e-15
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 2/170 (1%)

Query: 146 AYVTMQDSDEMIAVDLPSQTVKWRTATGPMPADIFGTHNDKTLLVGLTGGDGVQVFDVEG 205
           A+V+ +  + +  +DL +  V      G  P  +  +H+ K L +  +  D VQV DV  
Sbjct: 32  AWVSNEKDNSLSLIDLQTLEVTETLPVGQRPRGLLLSHDSKLLYICASDSDRVQVMDV-- 89

Query: 206 AQPKLVGKIPTGKGAHAFRSAGDGKTVFVSNRVANTISRIDLTTLKVVASYAVPGGPDCM 265
           A  K++ ++P+GK    F    + + ++VSN     ++ ID  T KV+    V   P+ M
Sbjct: 90  ATRKIIKELPSGKDPEQFALHPNDRWLYVSNEDDALVTVIDTVTDKVLGQIEVGIEPEGM 149

Query: 266 DVSADGKTLYVTSRWAKKLTVVDLVAQKVVRQVNVGRSPHGVWTLDHGKR 315
            VS DGK    TS     L  +D   Q +     V + P  V     G R
Sbjct: 150 AVSPDGKWAVNTSETTNMLHWIDTSTQTLADSTLVDQRPRFVEFSKDGSR 199



 Score = 62.4 bits (150), Expect = 1e-14
 Identities = 40/182 (21%), Positives = 85/182 (46%), Gaps = 2/182 (1%)

Query: 118 DGKDLKLAKRIATGKTPSHIWIDNTSTIAYVTMQDSDEMIAVDLPSQTVKWRTATGPMPA 177
           D + L++ + +  G+ P  + + + S + Y+   DSD +  +D+ ++ +     +G  P 
Sbjct: 46  DLQTLEVTETLPVGQRPRGLLLSHDSKLLYICASDSDRVQVMDVATRKIIKELPSGKDPE 105

Query: 178 DIFGTHNDKTLLVGLTGGDGVQVFDVEGAQPKLVGKIPTGKGAHAFRSAGDGKTVFVSNR 237
                 ND+ L V  +  D   V  ++    K++G+I  G        + DGK    ++ 
Sbjct: 106 QFALHPNDRWLYV--SNEDDALVTVIDTVTDKVLGQIEVGIEPEGMAVSPDGKWAVNTSE 163

Query: 238 VANTISRIDLTTLKVVASYAVPGGPDCMDVSADGKTLYVTSRWAKKLTVVDLVAQKVVRQ 297
             N +  ID +T  +  S  V   P  ++ S DG  L+ ++     +T++D+  ++V++ 
Sbjct: 164 TTNMLHWIDTSTQTLADSTLVDQRPRFVEFSKDGSRLWASAEIGGTVTILDVTTRQVLKT 223

Query: 298 VN 299
           +N
Sbjct: 224 LN 225



 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 13/307 (4%)

Query: 7   NTAAAAAEPPPIFVLNSLDASVSVINPVDWSEKQRITTGKEPHHIYMTPDEKSVIVANSA 66
           +T AA A     +V N  D S+S+I+       + +  G+ P  + ++ D K + +  S 
Sbjct: 26  HTMAATA-----WVSNEKDNSLSLIDLQTLEVTETLPVGQRPRGLLLSHDSKLLYICASD 80

Query: 67  GDSLTFLNPRTAEVQRVVYGIIDPYQLQFSRDMKWFVTAGNRLNHVDVYRWDGKDLKLAK 126
            D +  ++  T ++ + +    DP Q     + +W   +      V V   D    K+  
Sbjct: 81  SDRVQVMDVATRKIIKELPSGKDPEQFALHPNDRWLYVSNEDDALVTVI--DTVTDKVLG 138

Query: 127 RIATGKTPSHIWIDNTSTIAYVTMQDSDEMIAVDLPSQTVKWRTATGPMPADIFGTHNDK 186
           +I  G  P  + +      A  T + ++ +  +D  +QT+   T     P  +  + +  
Sbjct: 139 QIEVGIEPEGMAVSPDGKWAVNTSETTNMLHWIDTSTQTLADSTLVDQRPRFVEFSKDGS 198

Query: 187 TLLVGLTGGDGVQVFDVEGAQP------KLVGKIPTGKGAHAFRSAGDGKTVFVSNRVAN 240
            L      G  V + DV   Q       ++ G  P        + + DGK  FV+   AN
Sbjct: 199 RLWASAEIGGTVTILDVTTRQVLKTLNFQIKGVHPDKVQPVGIKLSADGKYAFVALGPAN 258

Query: 241 TISRIDLTTLKVVASYAVPGGPDCMDVSADGKTLYVTSRWAKKLTVVDLVAQKVVRQVNV 300
            ++ ID  T  V+    V      +  + D   L  T+  +  ++V+D    KV++ V V
Sbjct: 259 HVAVIDAKTFDVLDYLLVGRRVWQLAFTPDQSQLLATNGVSGDVSVIDAKQLKVLKSVKV 318

Query: 301 GRSPHGV 307
           GR P GV
Sbjct: 319 GRYPWGV 325