Pairwise Alignments

Query, 316 a.a., Surface antigen from Variovorax sp. SCN45

Subject, 353 a.a., Uncharacterized protein YncE from Escherichia coli ECRC62

 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 60/262 (22%), Positives = 112/262 (42%), Gaps = 19/262 (7%)

Query: 31  INPVDWSEKQRITTGKEPHHIYMTPDEKSVIVANSAGDSLTFLNPRTAEVQ-RVVYGI-- 87
           ++PV     Q I    +P    +    +++   N+   ++T ++ +T EV+ R+V     
Sbjct: 74  LDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK 133

Query: 88  -------IDPYQLQFSRDMKWFVTAGNRLNHVDVYRWDGKDLKLAKRIA-TGKTPSHIWI 139
                  + P +L           +G     V ++  DG+++KL   I  TGK  + + +
Sbjct: 134 RTEEVRPLQPRELVADDATNTVYISGIGKESV-IWVVDGENIKLKTAIQNTGKMSTGLAL 192

Query: 140 DNTSTIAYVTMQDSDEMIAVDLPSQTVKWRTATGPMPADIFGTH---NDKTLLVGLTGGD 196
           D+     Y T  D  E+I +D     +  R        + F  +   +       +T   
Sbjct: 193 DSKGKRLYTTNADG-ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251

Query: 197 GVQVFDVEGAQPKLVGKIPTGKG-AHAFRSAGDGKTVFVSNRVANTISRIDLTTLKVVAS 255
             +V  V+     ++ K+   +  A  F  A +    +V++R A  +S ID  + KVV +
Sbjct: 252 AAEVLVVDTRNGNILAKVAAPESLAVLFNPARN--EAYVTHRQAGKVSVIDAKSYKVVKT 309

Query: 256 YAVPGGPDCMDVSADGKTLYVT 277
           +  P  P+ + +SADGKTLYV+
Sbjct: 310 FDTPTHPNSLALSADGKTLYVS 331



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 27/299 (9%)

Query: 38  EKQRITTGKEPHHIYMTPDEKSVIVANSA------GDSLTFLNPRTAEVQRVVYGIIDPY 91
           E  R   GK  + +  +  E ++ +A S       G  +  L+P T EV + ++  + P+
Sbjct: 33  EMLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF 92

Query: 92  QLQFSRDMK--WFV-TAGNRLNHVDVYRWDGKD-LKLAKRIATGKT----PSHIWIDNTS 143
               +   +  WF  T  + +  +D    + K  L L  R  T +     P  +  D+ +
Sbjct: 93  GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT 152

Query: 144 TIAYVTMQDSDEMIAVDLPSQTVKWRTA---TGPMPADIFGTHNDKTLLVGLTGGDGVQV 200
              Y++    + +I V +  + +K +TA   TG M   +      K L    T  DG ++
Sbjct: 153 NTVYISGIGKESVIWV-VDGENIKLKTAIQNTGKMSTGLALDSKGKRLYT--TNADG-EL 208

Query: 201 FDVEGAQPKLVGK---IPTGKGAHAFRSAGDG--KTVFVSNRVANTISRIDLTTLKVVAS 255
             ++ A  K++ +   +  GK       + D   +  F+++  A  +  +D     ++A 
Sbjct: 209 ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268

Query: 256 YAVPGGPDCMDVSADGKTLYVTSRWAKKLTVVDLVAQKVVRQVNVGRSPHGVWTLDHGK 314
            A P     +   A  +  YVT R A K++V+D  + KVV+  +    P+ +     GK
Sbjct: 269 VAAPESLAVLFNPARNEA-YVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGK 326



 Score = 30.4 bits (67), Expect = 7e-05
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 118 DGKDLKLAKRIATGKTPS--HIWIDNTSTIAYVTMQDSDEMIAVDLPSQTVKWRTATGPM 175
           D K L   K +  GK     +I +D     A++T   + E++ VD  +  +  + A    
Sbjct: 215 DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274

Query: 176 PADIFGTHNDKTLLVGLTGGDGVQVFDVEGAQPKLVGKIPTGKGAHAFRSAGDGKTVFVS 235
            A +F    ++  +     G  V V D +    K+V    T    ++   + DGKT++VS
Sbjct: 275 LAVLFNPARNEAYVTHRQAGK-VSVIDAKSY--KVVKTFDTPTHPNSLALSADGKTLYVS 331

Query: 236 NRVANT 241
            +  +T
Sbjct: 332 VKQKST 337