Pairwise Alignments

Query, 261 a.a., Exodeoxyribonuclease III (EC 3.1.11.2) from Variovorax sp. SCN45

Subject, 265 a.a., putative Exodeoxyribonuclease III from Pseudomonas putida KT2440

 Score =  157 bits (397), Expect = 2e-43
 Identities = 95/259 (36%), Positives = 139/259 (53%), Gaps = 6/259 (2%)

Query: 1   MKIATWNVNSLTARLQHVLDWLIANPVDVLCLQELKMTDDKFPLEVLKSAGYEAAVFGQK 60
           +KIAT+N+N + +RL  +L WL     D+ CLQELK  D +FP   L++AGY +   GQ 
Sbjct: 4   LKIATFNINGIRSRLPALLAWLEREQPDIACLQELKAADQQFPRAELEAAGYGSLHHGQP 63

Query: 61  TYNGVAILSL-SPMRDVVKNIGGFTDD-QSRVIAATVDTPSGPLRVVNGYFVNGQAPGSD 118
           ++NGVAIL   S   +V + + G  +D QSR + A     +  + V   Y  NG      
Sbjct: 64  SWNGVAILVRGSDPLEVRRGLPGLEEDSQSRYLEAA----AHGVLVACLYLPNGNPLPGP 119

Query: 119 KFEYKMKWLDALRDWLRQEMAANPNLVLLGDFNITPEDRDSFDPVGLKETIHHTTEERNH 178
           KF+YK+ W + L    R    +    +L GDFN+ P D D ++P    +      E R  
Sbjct: 120 KFDYKLHWFECLIQHARSLQESGHPTLLAGDFNVVPTDMDIYNPRSWLKDALLQPESRAC 179

Query: 179 FKALLDLGLTDSFRMFEQPEKSFSWWDYRMLGYQKNRGLRIDHILVSEPLVPRVKGCVVD 238
           ++ LLD G  D+ R     E+ +++WDY    + +N GLRIDH+L++  L P +K   VD
Sbjct: 180 YQRLLDQGWLDAIRHLYPDERVYTFWDYFRNHWARNAGLRIDHLLLNRELAPYLKRAGVD 239

Query: 239 RVPRKWEKPSDHAPVVLDL 257
              R   K SDHAPV ++L
Sbjct: 240 AWVRNQAKASDHAPVWIEL 258