Pairwise Alignments

Query, 1361 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1208 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score = 63.9 bits (154), Expect = 9e-14
 Identities = 110/505 (21%), Positives = 189/505 (37%), Gaps = 46/505 (9%)

Query: 6   LFLISIAVLTLVVLLVLGMVLYFAARRSHAKPSSDPKVARIRFDSLRSSFRQAVELIEGN 65
           L  + +A+L+ +V+L        A R+       DP    +   +   +  Q +     N
Sbjct: 64  LVFVLVALLSWLVVLRTRFRRLQAERQQAMAAEVDPTQPFVH--AQEKALSQGLARYLDN 121

Query: 66  IASRADRYGIPWIMLLNEGDDHRQLPIEQSGVASALST-ESASA------AATQGISWHF 118
              R   Y +PW ++L      +   I+ +  + +L+  + A A      A    + W  
Sbjct: 122 AGGRRALYRLPWYLVLGARQAGKSSFIDCTDQSFSLTRIDKAQARGRPAQALAYPVGWWI 181

Query: 119 FDRGVVIDIQGAY---------LGSPDDDDASEKP-------WDEFLGMCRAYRPQRPFD 162
            +  V+ID  GA+         LGS   D  S  P       W   L   +  R QR  +
Sbjct: 182 SNDAVIIDPPGAFISQNGPADSLGSDSTDVESSVPSGTQAKLWQHLLDWLQRNRSQRALN 241

Query: 163 SVVITIPAALLLDESTDGRLELSKRAKLAHRRLWLAQNRFAMRFAVYVLITGAEQLEGFS 222
            +V+ +    LL  + + R  L   A L   RL+   ++   R  +YV+++  + L+GF 
Sbjct: 242 GLVLVVDLPALLHGTVEQRTAL---AHLLRTRLYEVSSQLGSRLPLYVVLSKFDLLDGFD 298

Query: 223 AFARALPEPLRASMLGWSSPYDLSTTYQP--GWVDEAVGTVVRSVSDVSAELFATDTSPQ 280
            F   L    R S+ G++   D   T+    G   E    ++  + +   +      SP 
Sbjct: 299 QFYSKLSAAKRNSLFGFTFKLDAVDTFDAWLGEYGEHYDRLLEQLFEQVIDRLDVQGSPA 358

Query: 281 GAGPQLLLPSRIEALRGQLQLYVDELMRPSAYHEPFFFRGIYLTGDAGESAQAVAAIDAE 340
                  L  ++  LR  L  ++ E +    +  P   RG+Y +          A +   
Sbjct: 359 LRSRLYSLHRQLLGLRPMLLSFLRETLASDRFTTPALVRGVYWSSVVQHGDVRNAFVREA 418

Query: 341 HDAYGRKDLEPIGGDLIAQLMRQPAFLRDLFEKKIFLEYGLTRPSRTQTLARPVLHRALR 400
              Y +  L  + G   A+ +    F++  F + I+ E GL        +AR    R L 
Sbjct: 419 AQPY-KTSLPLLEGKPQAKALAY--FIQQAFGRVIYKEAGLA--GDNVRVAR--RKRQLL 471

Query: 401 WTAVIFLGGWGIGLVVATWQLHRH-NSTLVSALSQLQHDAQY-RMRAQQRGEAIPTAWYR 458
           W     +G     + +A+W  HR+ +   V A S L    +Y      QR +  PT   R
Sbjct: 472 WVG-SSVGVLAFCVAIASW--HRYFDINGVKAASVLAKSREYSHHEVDQRLD--PTG--R 524

Query: 459 NKALSLLAMNERLRTDGTYSFFMPG 483
           N    L  + + +   G Y    PG
Sbjct: 525 NLLEPLDQIRDAVAVFGDYRAAWPG 549