Pairwise Alignments

Query, 1361 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1206 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score = 81.3 bits (199), Expect = 5e-19
 Identities = 115/492 (23%), Positives = 194/492 (39%), Gaps = 72/492 (14%)

Query: 9   ISIAVLTLVVLLVLGMVLYFAARRSHAKP----SSDPKVARIRFDSLRSSFRQAVELIEG 64
           ++  VL LV LL    VL    RR  A+     +++  VA     +   +  Q +E    
Sbjct: 61  VASLVLVLVPLLCWLGVLRTRFRRLQAERRQALAAEQDVALPFVQAQERALSQGLERYLD 120

Query: 65  NIASRADRYGIPWIMLLNEGDDHRQLPIEQSGVASALST-ESASAAATQG------ISWH 117
           N   R   Y +PW ++L +    +   I+++     L+  + A A   Q       + W 
Sbjct: 121 NAGGRRALYRLPWYLVLGDEQSGKSSFIDRTDQRFTLTRIDQAQARGRQTQAMAYPVGWW 180

Query: 118 FFDRGVVIDIQGAYLGS-PDDDDASEKP-------------WDEFLGMCRAYRPQRPFDS 163
             D  V+ID  G ++   P    A+  P             W+  LG  +  R QR  + 
Sbjct: 181 VSDDAVIIDPPGVFISQKPPVGSAANAPSEASAPPGIQARLWEHLLGWLQRKRSQRALNG 240

Query: 164 VVITIPAALLLDESTDGRLELSKRAKLAH---RRLWLAQNRFAMRFAVYVLITGAEQLEG 220
           V++ +    LL     GR E  +R  LAH    RL+   ++   R  +YV++T  + L+G
Sbjct: 241 VLLVVDLPALLH----GRPE--QRVALAHGLRTRLYEVSSQLGARLPLYVVLTKFDLLDG 294

Query: 221 FSAFARALPEPLRASMLGWSSPYDLSTTYQPGWV---DEAVGTVVRSVSDVSAELFATDT 277
           F  F   LP   R S+LG++   D    +   W+   DE  G ++  + +   +      
Sbjct: 295 FDQFYSQLPAAKRKSLLGFTFKLDAVDAFD-AWLDEYDEHYGRLLTQLQEQVIDRLDVLG 353

Query: 278 SPQGAGPQLLLPSRIEALRGQLQLYVDELMRPSAYHEPFFFRGIYLTGDAGESAQAVAAI 337
                G    L +++  LR  LQ ++ E +    +  P   RG+Y +        +V   
Sbjct: 354 KTAPCGRLFSLHAQLIGLRPILQAFLRETLASDRFTTPPLVRGVYWS--------SVVQQ 405

Query: 338 DAEHDAYGRKDLEPIGGDL-----IAQLMRQPAFLRDLFEKKIFLEYGLTRPSRTQTLAR 392
               +A+ R+  +P    L      AQ      F++  F + I+ E GL        +AR
Sbjct: 406 GDMRNAFVREAAQPYTTKLPLREGKAQGKALVYFIQQAFRRVIYQEAGLA--GDNVRVAR 463

Query: 393 PVLHRALRWTAVIFLGGWGIGLV-----VATWQLHR--HNSTLVSALSQLQ----HDAQY 441
              H  L W       G G+G++     VA+WQ +   + +   S L++ Q    H+   
Sbjct: 464 SKRH--LLWV------GSGVGILAFSIAVASWQRYADINGAKAASVLAKSQEYSGHEVDM 515

Query: 442 RMRAQQRGEAIP 453
           R+    R    P
Sbjct: 516 RLDPTGRNLLAP 527