Pairwise Alignments

Query, 350 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 275 a.a., putative Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 18/147 (12%)

Query: 111 IARIVMRGELVVAMLKVDTPPFFFFDDSGQWTGLEVGLAQSLAKELGVKLRFNRDASTFN 170
           + R+  R E+V  +++   PPF F +D  Q  G +V +A+++A +LGVKLR   +  +++
Sbjct: 28  LERVESRKEMVNVLME-SYPPFSFLNDHNQLDGYDVDVAKAVADKLGVKLRL--ETPSWD 84

Query: 171 AVVDLLASGQADLAISKLSRTLARTQTIAFSDAYLTLNHSLILN----RVKFAQISHGRP 226
            +     SG+ D+ I  ++ + AR +   F   Y      +++N    R+  A+   GR 
Sbjct: 85  VIAAGRWSGRYDICICSMTPSKARAEVFDFPVEYYASPAVIVVNASDERIHDAKDLEGR- 143

Query: 227 LPEVIRNFNGSIGVIAKSSFADYARTN 253
                      +G I+ SS+  Y   N
Sbjct: 144 ----------KVGSISASSYESYLNKN 160