Pairwise Alignments

Query, 350 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 243 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score = 57.4 bits (137), Expect = 4e-13
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 18/204 (8%)

Query: 130 PPFFFFDDSGQWTGLEVGLAQSLAKELGVKLRFNRDASTFNAVVDLLASGQADLAISKLS 189
           PPF   D S Q  G ++ LA++L K++     F   A  F++++  L   + D  IS + 
Sbjct: 32  PPFESLDASNQIVGFDIDLAKALCKQMQADCTFTNHA--FDSLIPSLKFKKYDAVISGMD 89

Query: 190 RTLARTQTIAFSDAYLTLNHSLILNR---VKFAQISHGRPLPEVIRNFNGSIGVIAKSSF 246
            T  R++ +AF+D Y   +  +I  +     F Q+   R            IG+   ++ 
Sbjct: 90  ITPERSKQVAFTDPYYANSAVVIAKKGAYTSFDQLKGKR------------IGMENGTTH 137

Query: 247 ADYARTNFPHAKIQEFATWNEVLAALHKGEIVSAYRDEFEVKRVLKADPTVSLVLRTVTL 306
             Y +   P  K   + ++   +  L  G I   + D   V   LK +P +      VT 
Sbjct: 138 QKYLQDKHPEVKTVAYDSYQNAIIDLKNGRIDGVFGDTAVVNEWLKTNPQLGTATEKVTD 197

Query: 307 KDLEDT-LGIGVAVTDPTLLAYVN 329
                T LGI V   +  LL  +N
Sbjct: 198 PQYFGTGLGIAVRPDNKALLEKLN 221