Pairwise Alignments

Query, 494 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 471 a.a., Multidrug efflux RND outer membrane protein OprN from Pseudomonas putida KT2440

 Score =  211 bits (538), Expect = 3e-59
 Identities = 144/466 (30%), Positives = 232/466 (49%), Gaps = 21/466 (4%)

Query: 13  LAAMLVAGCAVGPDYKTPDTPLPVSWKLEEPWRVSAPNDAADKGPWWRRFGDPQLDALQQ 72
           L A+ +A CAVGPDY+ P T      +L    +  A + +  +  WW++F DP L+ L Q
Sbjct: 11  LLALALAACAVGPDYQAPATEPA---QLSSDVQAKAYDRSRFESLWWKQFDDPVLNQLVQ 67

Query: 73  QALAGSPTLAIANARLAQARATLAANAAGQYPQVGLGTRASRLRISANRPLTNYATPNST 132
            +L G+  L +A ARL  AR+         +P V      SR    A+  L     P  T
Sbjct: 68  ASLDGNRDLRVAFARLKSARSIREDAENDPFPVV-----TSR----ASSDLGKGQIPGQT 118

Query: 133 TVQND---FALSLNASYEVDLAGRVQRTVEGAKASAEQSAADLQNTRLLLSADVASSYFN 189
           T + +   + L L+ ++E+DL GR+QR +E ++A    +AADLQ  ++ L A++  +Y  
Sbjct: 119 TERVNSERYDLGLDMAWELDLFGRIQRQIEASEAQEAVAAADLQQLQVSLIAELVDAYGQ 178

Query: 190 LRSTDIELDVVTRSIALQRRALELVTARHDLGAVSGLDVAQQQSLLETTLTQVDVLRKQR 249
           LR   +   +   ++  Q+ +  +     D G  + LDV +  + L      V  L+ ++
Sbjct: 179 LRGAQLREKIALANLKTQQESRTITETLRDAGVGNDLDVVRADARLAGVEATVPQLQAEQ 238

Query: 250 SQYEHALATLTGTPAPSFSLPVDLREIRPPAV----PLGVPSEILQRRPDVASAERAMAA 305
           ++  H +ATL G    + S  VDL     PA+    P+G P E+L+RRPD+ SAER +AA
Sbjct: 239 ARARHRIATLLGQRPDALS--VDLSPKALPAIAKALPVGDPGELLRRRPDIRSAERQLAA 296

Query: 306 ANAQIGVATAAFYPSIFISPTVGVDSRTIETLFNGPSLLWSVGVSATQVLFDGGRIRANV 365
           A A +GVATA  +P + +S  +G  +     + +  +  W++G S T   FD G +RA +
Sbjct: 297 ATANVGVATADLFPRVSLSGFLGFTAARGSQIGSSAANAWALGPSITWAAFDLGSVRARL 356

Query: 366 DFAKAGYDVTVGNYRRTVLTAMQEVEDGITGLSALDSATAQAQAAVTAARRVLDMATSRY 425
             AKA  +  + NY + VL A++E  +  +                 A+R+  ++A+ RY
Sbjct: 357 RGAKADAEGALANYEQQVLLALEESANAFSDYDKTQQRLLSLMRQSDASRKAAELASIRY 416

Query: 426 EGGASTYLDVITAQQSLLTVERQAAQLRGQRLLTAVFLVKALGGDW 471
             G   YL ++ A++  L+ E   AQ         V + KALGG W
Sbjct: 417 REGTVDYLVLLDAERERLSAEDAQAQGEVDLYRGIVSIYKALGGGW 462