Pairwise Alignments

Query, 415 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  114 bits (286), Expect = 4e-30
 Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 32/368 (8%)

Query: 64  AGTTERAK--QYVQTALPRTPTAG-QTLSLPGTLQGFVQSP----ISARASGYLKRWTKD 116
           AG ++ A+  +   TA  R  T   Q L++   L G + +P    + AR +G + +    
Sbjct: 23  AGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRARVAGVVLKRVYR 82

Query: 117 IGSRVEKGELLAEIETPEIDQQLSQAVAARAQAASGLELARSTADRWEALRKKDVVSQQE 176
            GS V++G++L  I+          A A  A+A +    AR    R+  L     VS+QE
Sbjct: 83  EGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYRELVDDKAVSRQE 142

Query: 177 LDERRSAVAQATSNVAAADANVQRLKQTEGFKRVVAPFAGVITRRNVDVGDLIDAGSGGG 236
            D  +++  QA + VA A A ++R +   G+  V AP +G I R  V  G L+    G  
Sbjct: 143 YDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVTEGALV----GQN 198

Query: 237 AGRALFLLAQTDPLRVYINVPQAYAQL------VKAGQPVVVTQAELRGQTFK------- 283
               L  + Q DP  ++ +V Q+  +L      ++AG+   V   + R    +       
Sbjct: 199 ETTPLATIQQLDP--IHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQDDGSAYP 256

Query: 284 --GQVARTAGSIDTTTRMMQVEVSLPNSDGALLPGAYVQVSLPLAAS-RTLSVPSNALLF 340
             G++  +  S+D +T  + +    PN D  LLPG+YV+V L  A   + LSVP  A+L 
Sbjct: 257 LPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVPQRAILR 316

Query: 341 RAEGT-RIAVVDPQGRVNLRAVTLGRNYGENVEVIDGLEHTDRMVLNPSDSLAEGDVVAV 399
            + G  ++ VVD   RV+ R V LG   G+   V +GL   +R+V+     +  GD V V
Sbjct: 317 DSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKAGDQVQV 376

Query: 400 --APETPP 405
              P  PP
Sbjct: 377 DNTPAAPP 384