Pairwise Alignments

Query, 415 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  114 bits (285), Expect = 5e-30
 Identities = 95/329 (28%), Positives = 157/329 (47%), Gaps = 18/329 (5%)

Query: 90  LPGTLQGFVQSPISARASGYLKRWTKDIGSRVEKGELLAEIETPEIDQQLSQAVAARAQA 149
           LPG ++    + + AR  G +     + G+ V+ G++L +I+       L++A A  A+A
Sbjct: 54  LPGRVEPMRVAEVRARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARA 113

Query: 150 ASGLELARSTADRWEALRKKDVVSQQELDERRSAVAQATSNVAAADANVQRLKQTEGFKR 209
            +  + A++   R+E L K + VSQQ+ D   + +  A + V +A A+VQ  +   G+  
Sbjct: 114 QAVQQEAQARVKRYEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYAT 173

Query: 210 VVAPFAGVITRRNVDVGDLIDAGSGGGAGRALFLLAQTDPLRVYINVPQAYA------QL 263
           V AP +G I R     G L+    G G    +  + Q DP  +YI+  Q+ A      Q 
Sbjct: 174 VTAPISGRIGRALATEGALV----GQGEATLMARIQQLDP--IYIDFTQSAADALRLRQA 227

Query: 264 VKAGQPVVVTQ---AELRGQTFK--GQVARTAGSIDTTTRMMQVEVSLPNSDGALLPGAY 318
           +K G     +Q   A++ G  F+  G++  T  S+D  T  + +     N+DG LLPG Y
Sbjct: 228 LKDGALSADSQRLTAQVEGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMY 287

Query: 319 VQVSLPLAA-SRTLSVPSNALLFRAEGTRIAVVDPQGRVNLRAVTLGRNYGENVEVIDGL 377
           V+V  P    +  + VP  A+   ++G    +V   G    RAV  G   G   ++ +GL
Sbjct: 288 VRVRTPQGTDNHAILVPQRAVQRGSDGQARVLVATNGIAEARAVRTGVMQGSRWQITEGL 347

Query: 378 EHTDRMVLNPSDSLAEGDVVAVAPETPPA 406
           E  D++++     LA G  VA A +   A
Sbjct: 348 EPGDQVIVGSPAGLAPGMPVAPAQKQTAA 376