Pairwise Alignments

Query, 415 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

 Score =  110 bits (276), Expect = 6e-29
 Identities = 106/415 (25%), Positives = 176/415 (42%), Gaps = 47/415 (11%)

Query: 18  EGDGELLRRRQIVRRTRWLVLIVLVLLGLGAARTVFVRIANARALEAGTTERAKQYVQTA 77
           +G G +LRRR ++     L +++L++L LG  +   +     + ++  T  +    V  A
Sbjct: 17  QGTGPMLRRRMLIM----LAVVLLIVLALGGYKAFSIY----QQIQMFTAPKPPITVAAA 68

Query: 78  LPRTPTAGQTLSLPGTLQGFVQSPISARASGYLKRWTKDIGSRVEKGELLAEIETPEIDQ 137
           +       + L   G+L+      +S    G +K    D G +V+ G+LL ++       
Sbjct: 69  MAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLND----- 123

Query: 138 QLSQAVAARAQAASGLELARSTADRWEALRKKDVVSQQELDERRSAVAQATSNVAAADAN 197
              Q  A    A + L LA+    R   L     +S+ E D       + +S      A 
Sbjct: 124 --DQETALLGTALADLGLAKVDFGRGSQLVGDSAISRGEFD-------RLSSQYRRNQAV 174

Query: 198 VQRLKQTEGFKRVVAPFAGVITRRNVDVGDLIDAGSGGGAGRALFLLAQTDPLRVYINVP 257
           V++LK  +  KR+ APF+G I  R VD+G  + AG+       +  L  T  L V  NVP
Sbjct: 175 VEQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAGT------VIATLQDTSSLYVDFNVP 228

Query: 258 QAYAQLVKAGQPVVVTQAELRGQTFKGQVARTAGSIDTTTRMMQVEVSLPNSDGALLPGA 317
           +     +  GQ V+V  A   GQ F G ++     ++ TTR + V  ++ N DG LLPG 
Sbjct: 229 EQALPHLSLGQQVLVQVAAYPGQRFPGSLSAINPKVEETTRNLLVRATMANPDGKLLPGM 288

Query: 318 YVQVSLPLAASR-TLSVPSNALLFRAEGTRIAVVDP------------QGRVNL----RA 360
           +  + + L   +  + VP +A+ +   G  + V  P            +G+  L    R 
Sbjct: 289 FASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRT 348

Query: 361 VTLGRNYGENVEVIDGLEHTDRMVLNPSDSLAEGDVVAVAPETPPAKAPTPKAPA 415
           V  G      V V +GL+  +++V      L  G  + +  +   A  P P A A
Sbjct: 349 VKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDN--ALKPEPGAAA 401