Pairwise Alignments

Query, 1073 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

Subject, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  355 bits (911), Expect = e-101
 Identities = 288/1074 (26%), Positives = 508/1074 (47%), Gaps = 65/1074 (6%)

Query: 3    QLALRRPYTFIVMAMLIVLATPFVLARMATDIFPEINIPVVSVIWNYTGLPAQEMGQRIS 62
            +L + RP    +  + IVLA       +     P+++ P + V+  Y G   Q M   ++
Sbjct: 5    RLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMTSAVT 64

Query: 63   GQVERGLTTTVSDIEHIESQSLAGVSIIKVFFQPTANIEMAISQVVASMQAQVRQLPPGI 122
              +ER     +  +E + S S  G S++ + F    N+++A  QV A++ A    LP  +
Sbjct: 65   APLERQFGQ-MPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAASNLLPSDL 123

Query: 123  -TPPLVIKYSASSVPVIQLALSSPTRSENSLFDATVNQLRPQLITVPGAAIPFPYGGKNR 181
              PP+  K + +  PV+ LA+SS T     L D    ++  +L  + G  +    GG+ +
Sbjct: 124  PAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIAGGQRQ 183

Query: 182  LISVDLDTQALQARGLSPADVVNAVNTQNLILPSGT----AKFGATEYNVKMNGSPDAIA 237
             + + ++  AL A GL+  DV   +   N+  P G      +    + N ++  SP+  A
Sbjct: 184  AVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLR-SPEEYA 242

Query: 238  GLNDLPIRTVNGATTYLRDVAYVRDGFSPQTNVVRQDGVRGVLLSVLKNGGASTLDIVSN 297
               +L +   NGA   L+DVA + DG   +      +    VLL++ +  GA+ +++V  
Sbjct: 243  ---NLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENHAVLLNIQRQPGANVIEVVDR 299

Query: 298  IRAMLPIAAQTMPEDIKITPLFDQSVFVKAAVKGVVFEAILAAALTAAMVLLFLGNWRST 357
            I+ +LP     +P  + ++ L D++  ++AAVK V  E ++A  L   +  +FL  + +T
Sbjct: 300  IKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFSAT 359

Query: 358  LIIGLTIPLSILASILVLYSLGETLNLMTLGGLALSVGILVDQAIVTIENIERHLHMG-T 416
            LI  + +PLS++ +  V+Y  G ++N +TL  L ++ G +VD AIV +ENI RH+  G T
Sbjct: 360  LIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEGET 419

Query: 417  PLKDAIEVGAGEIGSAAFVSTLCICIVFVPMFFLSGVARFLFVPLAEAVVFAMIASYLLS 476
            P++ A++ GA +IG      T  +  V +P+ F++ V   LF   A  +  A++ S ++S
Sbjct: 420  PMQAALK-GARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVVS 478

Query: 477  RTLVPTLVMLLMGGSHGPQQQQPAEGTRQSALQRLYRAFDRRFERVRRAYTLVLSAVLSR 536
             TL P +   L+       +++P E  +     R YRA     + + + Y   L  VL  
Sbjct: 479  LTLTPMMCARLL-------KREPKEEEQ----GRFYRASGAWIDWLIQHYGSALQWVLKH 527

Query: 537  RAGFIGLFLGFCLLSCLLYPVLGRDFFPTVDAGQIRLHLRAPTGTRIEETARLTDQVEAA 596
            +   + + +   +L+  LY V+ + FFP  D G I+    AP  T     A ++++ +A 
Sbjct: 528  QPLTLLVAVASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSF---AAMSERQQAL 584

Query: 597  IRELVPPDQLETILDNLGVPNSGINLSYSNAGTIGTFDGELLLSLK---EGHKPTEQHVS 653
             + ++    ++++   +GV      L+           G LL++LK   E      + +S
Sbjct: 585  SKVILQDPAVQSLSSYIGVDGDNATLN----------SGRLLINLKPHGERDVSASEVIS 634

Query: 654  LLRAELPKRFPGIEFFFQPADIVTQILNFGLPAAIDVQFSGNDMAGNAARAAELTKAIRQ 713
             L+ ++  R  GI  F QP   ++ I +           S  D    A  + +L +A++Q
Sbjct: 635  RLQPQV-DRLVGIRLFMQPVQDLS-IEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQ 692

Query: 714  IPGAVDAHVHQRLDGPALSLQMDRTRLQQYGLTASNVGQNVLIALSGSSQTAPAFWLNPA 773
             P   D     +  G  + L +DR    + G++ S +  N L    G  Q +  +     
Sbjct: 693  RPELADVASDLQDKGLQVYLVIDRDMASRLGISVSQI-TNALYDAFGQRQISTIY----T 747

Query: 774  NGVVYSIAVQTPQYTVDSLDSLLNIPVGAS-GGQGGTGA----QQLLGNLVSTQADRQPA 828
                Y + +Q+         +L +I V A+ GGQ    A    +Q    L  +   + PA
Sbjct: 748  QASQYRVVLQSSDAATIGPQALESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPA 807

Query: 829  VMSRYNIAPVIDVYVSVQGTDLASVASKVQKLVDEMRPKLSRGSRVDIRGQVQTMQSSFI 888
            V   +N+A    +  +VQ      V  +VQK +      +  G +   +G  +  Q+S  
Sbjct: 808  VTLSFNLAHGASLGEAVQ------VIEQVQKDIG-----MPLGVQTRFQGAAEAFQASLS 856

Query: 889  GLGVGLAMAIVLVYLLIVVTFQSWLDAAIIITALPAALAGIAWMLFITGTTLSVPALTGA 948
               + +  A+V +Y+++ V ++S++    I++ LP+A  G    L I+G  L + A+ G 
Sbjct: 857  STLLLILAAVVTMYIVLGVLYESYIHPITILSTLPSAAVGALLALLISGNDLGMIAIIGI 916

Query: 949  IMTMGVATANSILLVSFARE-RLQAGIPPLSAALEAGATRIRPVLMTALAMIIGMIPMAL 1007
            I+ +G+   N+I+++ FA E     G+ P  A  +A   R RP+LMT LA + G +P+ L
Sbjct: 917  ILLIGIVKKNAIMMIDFALEAERNQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLML 976

Query: 1008 GLGEGAEQNAPLGRAVIGGLVFATVSTLFFVPAVFAGVHSRLARR-RAAREASQ 1060
              G GAE   PLG  ++GGL+ + V TLF  P ++     RLARR R A +  Q
Sbjct: 977  ATGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYL-YFDRLARRLRPATDVKQ 1029