Pairwise Alignments

Query, 555 a.a., Lipid A export permease/ATP-binding protein MsbA from Variovorax sp. SCN45

Subject, 601 a.a., lipid transporter ATP-binding/permease from Pseudomonas simiae WCS417

 Score =  363 bits (931), Expect = e-104
 Identities = 211/568 (37%), Positives = 330/568 (58%), Gaps = 18/568 (3%)

Query: 1   MLAAITEPLMAALLKPLLDR------------GFTRGEMPLWFVPAAVLLLFAVRGIAQF 48
           ++ A T+P++  +LK  +D              F R    L  VP  ++L+ A +G+  F
Sbjct: 38  LIFASTQPMLGYILKYFVDGLSNPEAVLFPSVPFLRDLQLLQAVPLLIILIAAWQGLGSF 97

Query: 49  ISQYALSRIANEGMQKLRRVMFERLLGAELALFTRQSASALSNTVVYEVQTGAMLLVQAL 108
           +  Y L++++   +  LR  +F  LL      F   ++  L + + + V         A+
Sbjct: 98  LGNYLLAKVSLGLVHDLRVQLFNNLLTLPNRYFDNHNSGHLISRITFNVTMVTGAATDAI 157

Query: 109 LGLSRDGFTLIALLGYLVYLNWKLTLIVAFLVPSISWIMKVFSKRLYRLTQQGQQATDEL 168
             + R+G T+I L   L+++NW+LTL++  ++P I+ ++   SK+  + +++ Q A  ++
Sbjct: 158 KVVIREGMTVIFLFASLLFMNWRLTLVMIAILPLIAVMVSTASKKFRKQSKKIQVAMGDV 217

Query: 169 AYVVEENVLAHRVVRLHGAEGAQGRRFEQLSQRLNRLAVKSTIAQAATTPLTQMMASLAL 228
            +V  E +  +RVVR  G E  + +RF + SQ      ++ T   A  TP  Q++   A+
Sbjct: 218 THVASETIQGYRVVRSFGGEVYEEKRFLKASQSNTNKQLRMTRTGAIYTPALQLVIYTAM 277

Query: 229 SVVVMIALWQSGKQGFTVGGFVAYITAMLMLIAPIRRLAEVAGPITRGLAALERGLVLID 288
           +V++ + L+  G    + G  VAYIT   +L  PIR+L+EV+  I +G+A  E     +D
Sbjct: 278 AVLMFLVLYLRGDA--SAGDMVAYITLAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLD 335

Query: 289 EVAPESQGTFRIEHAEGRIELRNVQVSYRGDDEQRALDGVNLTIEPGQVVAFVGPSGSGK 348
           E     +GT   +   GR+++RN+  +Y G  E+  L  ++ T EPGQ++A VG SGSGK
Sbjct: 336 EEVEVDRGTIERDKVSGRLDVRNLNFTYPGT-ERHVLKDISFTAEPGQMIALVGRSGSGK 394

Query: 349 TTLVNLLPRFVQPSSGQVLLDGHDTSEWELKSLRAQFAMVSQDVVMLNETLAANVALG-- 406
           +TL +L+PRF    SG++LLDG +   ++L +LR   A V+Q V + ++T+  N+A G  
Sbjct: 395 STLASLIPRFYHHESGEILLDGIEIENYKLLNLRKHIAQVTQHVTLFSDTVTNNIAYGDL 454

Query: 407 SEIDRERVLQCIDAANLSSHVENLPQGIDTVLGHNATQLSGGQRQRLAIARALYKNAPVL 466
           +   R  V      AN    ++ LP+G DT +G N   LSGGQRQRLAIARAL KNAP+L
Sbjct: 455 AGAPRAEVEAAAADANAKDFIDQLPKGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLL 514

Query: 467 LLDEATSALDTESERLVQDALQRLMQNRTTLIVAHRLSTIQHADRIIVMEQGRIAEQGSH 526
           +LDEATSALDTESER +Q AL ++MQ RTTL++AHRLSTI+ AD I+VM+ GRI E+G+H
Sbjct: 515 ILDEATSALDTESERHIQAALDKVMQGRTTLVIAHRLSTIEKADLILVMDDGRIVERGTH 574

Query: 527 EQLMQLDGLYARLQTLAVRSAPPGQDPT 554
            +L+  +G YARL  + +  AP   D T
Sbjct: 575 GELLAQNGYYARLHAMGL-DAPVSADIT 601