Pairwise Alignments

Query, 555 a.a., Lipid A export permease/ATP-binding protein MsbA from Variovorax sp. SCN45

Subject, 587 a.a., putative ABC efflux transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

 Score =  280 bits (716), Expect = 1e-79
 Identities = 197/554 (35%), Positives = 292/554 (52%), Gaps = 23/554 (4%)

Query: 3   AAITEPLMAALLKPLLDRGF-TRGEMPLWFVPAAVLLLFAVRGIAQFISQYALSRIANEG 61
           AAIT   M   ++ L+D+GF TR    L       LLL     +  F   Y +S I    
Sbjct: 38  AAITLS-MGQGIRLLVDQGFMTRSAHQLNQTIGLFLLLVLALAVGTFSRFYLVSWIGERC 96

Query: 62  MQKLRRVMFERLLGAELALFTRQSASALSNTVVYEVQTGAMLLVQALLGLSRDGFTLIAL 121
           +  +RR +F+ L+G     F    +S + + +     T    L+Q+++G S   F   AL
Sbjct: 97  VADIRRAVFDHLIGLHPGFFEDNRSSEIQSRL-----TADTTLLQSVIGSSLSMFLRNAL 151

Query: 122 L--GYLVYL---NWKLTLIVAFLVPSISWIMKVFSKRLYRLTQQGQQATDELAYVVEENV 176
           +  G +V L   N KLT IV   +P +   + +F +R+  L++Q Q    ++   V E +
Sbjct: 152 MVIGGVVLLFITNPKLTSIVVVTLPLVLAPILLFGRRVRSLSRQSQDRVADVGSYVAETL 211

Query: 177 LAHRVVRLHGAEGAQGRRFEQLSQRLNRLAVKSTIAQAATTPLTQMMASLALSVVVMIAL 236
              + V+ +  +      F    +    +A K    +A    L  ++   A+ V++ +  
Sbjct: 212 GQIKTVQAYNHQAHDRELFADTVEAAFTVARKRITQRAWLITLVIVLVLGAVGVMLWVGG 271

Query: 237 WQSGKQGFTVGGFVAYITAMLMLIAPIRRLAEVAGPITRGLAALERGLVLIDE----VAP 292
                   + G   A++   L++ +    L+EV G + R   A ER   L+      + P
Sbjct: 272 MDVIAGRISAGELAAFVFYSLIVGSAFGTLSEVIGELQRAAGAAERIAELLAARSAILPP 331

Query: 293 ESQGTFRIEHAEGRIELRNVQVSYRGDDEQRALDGVNLTIEPGQVVAFVGPSGSGKTTLV 352
           +         A G IEL+ V  +Y       A+DG++LTIEPGQ VA VGPSG+GK+TL 
Sbjct: 332 DVAQVLPQPRASGHIELQQVVFAYPSRPTVAAVDGLSLTIEPGQTVALVGPSGAGKSTLF 391

Query: 353 NLLPRFVQPSSGQVLLDGHDTSEWELKSLRAQFAMVSQDVVMLNETLAANVALGSEIDRE 412
           +LL RF  P  G++LLDG   ++++   LR QFA+V+Q+  +   T+ AN+  G     E
Sbjct: 392 DLLLRFYDPQQGRILLDGQPVTDFDPDQLRRQFALVAQNPSLFRGTVEANIRYGRP---E 448

Query: 413 RVLQCIDAANLSSH----VENLPQGIDTVLGHNATQLSGGQRQRLAIARALYKNAPVLLL 468
             L  ++AA   +H    +  LPQG  T LG     LSGGQRQRLAIARAL  +AP+LLL
Sbjct: 449 ATLAEVEAAARGAHADEFIRQLPQGYQTPLGEGGIGLSGGQRQRLAIARALLVDAPILLL 508

Query: 469 DEATSALDTESERLVQDALQRLMQNRTTLIVAHRLSTIQHADRIIVMEQGRIAEQGSHEQ 528
           DEATSALD +SE L+Q AL  LM  RTTL++AHRL+T+QHA+RI V++QGR+   G+H Q
Sbjct: 509 DEATSALDAQSEYLIQQALPSLMAGRTTLVIAHRLATVQHAERIAVIDQGRLVAVGTHRQ 568

Query: 529 LMQLDGLYARLQTL 542
           L++   LYARL  L
Sbjct: 569 LIEDSPLYARLAAL 582