Pairwise Alignments

Query, 264 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 250 a.a., L-arginine ABC transporter - periplasmic binding subunit from Pseudomonas putida KT2440

 Score = 91.7 bits (226), Expect = 1e-23
 Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 11/250 (4%)

Query: 6   TFTRTCVALALVAGVAQAAMADQLDDIKKAGKVRVAIAMGTPLFSFADANLQPTGSDVDT 65
           T+ +  +A A    ++  AMA        A K+R+ I    P F+  DA+    G D D 
Sbjct: 3   TYKKFLLAAAATLVMSANAMA--------AEKLRMGIEAAYPPFNNKDASGNVVGFDKDI 54

Query: 66  ATALAKDLGVKLEIVSITNAARVPTLQAQRADLVIADLSITPEREKVVDFSVPYAVISII 125
             AL   + V+  +V+      +P L A++ D +++ LSIT ER++ VDF+ PY    + 
Sbjct: 55  GDALCAKMKVECSVVTSDWDGIIPALNAKKFDFLVSSLSITDERKQAVDFTNPYYSNKLQ 114

Query: 126 VGGPKSIKV-TDYADLNGKRIGLTRATVNDTLTTQQAKGAEIVRYEDDATLITSMVTGQI 184
              PK++   TD   L GK IG  RAT+  T         EI  Y+        +V+G+I
Sbjct: 115 FIAPKNVDFKTDKESLKGKVIGTQRATLAGTYLEDNYPDVEIKLYDTQENAYLDLVSGRI 174

Query: 185 DLFSSTPSNLSEMVKQAPAKNLELKFAQ-KDFD-LGIALNKEQPKLKEWVNNWVVTNQKN 242
           D   +      E +K     N E K     D D +GIA+ K   KL++ +N  +   + +
Sbjct: 175 DGILADKYVQYEWLKSKDGSNFEFKGEPVMDSDKIGIAVRKGDTKLRDDLNKALAEIKAD 234

Query: 243 GKLNAIYKKY 252
           G    I  KY
Sbjct: 235 GTYKKINDKY 244