Pairwise Alignments

Query, 468 a.a., surface antigen gene from Variovorax sp. SCN45

Subject, 340 a.a., conserved hypothetical protein containing WD40/YVTN repeat domain from Pseudomonas putida KT2440

 Score = 50.8 bits (120), Expect = 7e-11
 Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 32/221 (14%)

Query: 178 VAVNAAGTFAYVANWHSSSVSGYRIDADTGALTAIPGSPFAAGIAPYSVTVNPAGTFAYV 237
           V  N  G   Y AN  S+S+S  +++  TG ++ +     A  IAP+++ V+P G+   V
Sbjct: 23  VMANPTGN-VYTANERSASIS--QVNLATGDVSTV-----ALPIAPHNLQVSPDGSLLLV 74

Query: 238 VHRNGLISAYRIDATTGALTAVTGSP-------FATGAVPVSVTVNPAGTFAYVANSGSN 290
           V   G       +   G L   + S        F  G  P  V  +  G  A+V +S +N
Sbjct: 75  VGVAGHAGHSSGEKPGGQLLVFSTSALDRPPFSFPAGDHPAHVITDVTGLRAFVTDSAAN 134

Query: 291 NVSAYRIDAATGALTAITGSPFLAGNQPHSITVNPAGTFAYVANWSNAISVYRIDADTGA 350
            V  + ++        + G P   G  PH + ++P G   Y+AN  +  SV  ID  T  
Sbjct: 135 RVRIFDLEQRI----ELPGIP--TGRYPHGLRLSPDGRTLYIANMKSD-SVSLIDVVT-- 185

Query: 351 LTAIADSPFFTIGL-PNSIAVNPAGTFAYLA----NQFGYI 386
              + ++    +G  P  +   P G  A+++    NQ G I
Sbjct: 186 ---LKETAQIPVGKGPVQVGFAPDGRLAFVSLSATNQLGII 223



 Score = 46.2 bits (108), Expect = 2e-09
 Identities = 49/196 (25%), Positives = 76/196 (38%), Gaps = 18/196 (9%)

Query: 139 AYVANKSDNNISAYRIDVATGALTAIPGSPFATGTSPASVAVNAAGTFAYVANWHSSSVS 198
           A+V + + N +  + ++        +PG P  TG  P  + ++  G   Y+AN  S SVS
Sbjct: 126 AFVTDSAANRVRIFDLEQRI----ELPGIP--TGRYPHGLRLSPDGRTLYIANMKSDSVS 179

Query: 199 GYRIDADTGALTAIPGSPFAAGIAPYSVTVNPAGTFAYVVHRNGLISAYRIDATTGALTA 258
              ID  T   TA        G  P  V   P G  A+V     L +  ++     A   
Sbjct: 180 --LIDVVTLKETA----QIPVGKGPVQVGFAPDGRLAFV----SLSATNQLGIIDTARRK 229

Query: 259 VTGSPFATGAVPVSVTVNPAGTFAYVANSGSNNVSAYRIDAATGALTAITGSPFLAGNQP 318
           V G     G  P+ +     G   YVAN GS      R+        +  G+    G   
Sbjct: 230 VIGK-VDVGRTPIQMMATVDGRQVYVANQGSGQNPDDRVSIVDIQTRSSLGT-VTTGKGA 287

Query: 319 HSITVNPAGTFAYVAN 334
           H + ++  G + +V+N
Sbjct: 288 HGVAISSDGAYVFVSN 303



 Score = 44.3 bits (103), Expect = 6e-09
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 16/196 (8%)

Query: 140 YVANKSDNNISAYRIDVATGALT--AIPGSPFATGTSPASVAVNAAGTFAYVANWHSSSV 197
           Y AN+   +IS  ++++ATG ++  A+P +P     SP    +   G   +  +      
Sbjct: 32  YTANERSASIS--QVNLATGDVSTVALPIAPHNLQVSPDGSLLLVVGVAGHAGHSSGEKP 89

Query: 198 SGYRIDADTGALTAIPGSPFAAGIAPYSVTVNPAGTFAYVVHRNGLISAYRIDATTGALT 257
            G  +   T AL   P S F AG  P  V  +  G  A+V   +   +  RI      + 
Sbjct: 90  GGQLLVFSTSALDRPPFS-FPAGDHPAHVITDVTGLRAFVT--DSAANRVRIFDLEQRIE 146

Query: 258 AVTGSPFATGAVPVSVTVNPAGTFAYVANSGSNNVSAYRIDAATGALTAITGSPFLAGNQ 317
            + G P  TG  P  + ++P G   Y+AN  S++VS   ID  T   TA        G  
Sbjct: 147 -LPGIP--TGRYPHGLRLSPDGRTLYIANMKSDSVSL--IDVVTLKETA----QIPVGKG 197

Query: 318 PHSITVNPAGTFAYVA 333
           P  +   P G  A+V+
Sbjct: 198 PVQVGFAPDGRLAFVS 213



 Score = 34.7 bits (78), Expect = 5e-06
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 321 ITVNPAGTFAYVANWSNAISVYRIDADTGALTAIADSPFFTIGLPNSIAVNPAGTFAYLA 380
           +  NP G   Y AN  +A S+ +++  TG ++ +A  P      P+++ V+P G+   + 
Sbjct: 23  VMANPTGN-VYTANERSA-SISQVNLATGDVSTVA-LPI----APHNLQVSPDGSLLLVV 75

Query: 381 NQFGYILAYRIDAATGALAAITGSPL-------LAGNQPNAITVNPTGNFAYATDQADNT 433
              G+      +   G L   + S L        AG+ P  +  + TG  A+ TD A N 
Sbjct: 76  GVAGHAGHSSGEKPGGQLLVFSTSALDRPPFSFPAGDHPAHVITDVTGLRAFVTDSAANR 135

Query: 434 VLAYRIDAATGALTPLTGSPFSTGREP 460
           V  + ++        L G P  TGR P
Sbjct: 136 VRIFDLEQR----IELPGIP--TGRYP 156



 Score = 26.6 bits (57), Expect = 0.001
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 119 VIGASNVSN--VSVACAIRPQFAYVANKSDNNISAYRIDVATGALTAIPGSPFATGTSPA 176
           VIG  +V    + +   +  +  YVAN+        R+ +      +  G+   TG    
Sbjct: 230 VIGKVDVGRTPIQMMATVDGRQVYVANQGSGQNPDDRVSIVDIQTRSSLGT-VTTGKGAH 288

Query: 177 SVAVNAAGTFAYVANWHSSSVS 198
            VA+++ G + +V+N  + +VS
Sbjct: 289 GVAISSDGAYVFVSNIEAGTVS 310