Pairwise Alignments

Query, 508 a.a., ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes) from Variovorax sp. SCN45

Subject, 313 a.a., putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

 Score =  103 bits (258), Expect = 7e-27
 Identities = 95/298 (31%), Positives = 143/298 (47%), Gaps = 21/298 (7%)

Query: 5   RCLHRLALLLTLAWLAMAPAAHAADDTLRVGSKRFTESYILAELLAQTAAPHTASPPVVR 64
           R   R+ALLL  A L    A  A    +R+G++ FTE  +LAE+ AQ    +     V+ 
Sbjct: 10  RMKKRIALLLGAALLFAGFAQAAEKPLIRIGARVFTEQTVLAEITAQYLRANGFDVRVIG 69

Query: 65  QGLGNTAIVYEALRSGAIDLYAEYTGTIA---QEILKGSPAESREAMNAAL----APMGL 117
            GLG++ +  +A  +G +DL  EYTG        I +  P  S EA  A +    A   L
Sbjct: 70  -GLGSS-LARQAQETGQLDLMWEYTGVSLVSYNHIDERMP--SAEATYAKVKELDAKKDL 125

Query: 118 GVAIPLGFNDGYALAVRAADADRLG-LRTLSDLAK--HPELK----LGLSNEFIGRADGW 170
               P  F++ YAL +    A+    + ++SDL +    E K    + L  EF  R DG 
Sbjct: 126 IWLTPSKFSNTYALGLPKQVAEAYPQINSISDLNQVLRDERKRNHLVALDTEFANRPDGL 185

Query: 171 KGLAERYGFKQTPTGL---DHGLAYDAIAAKQIDAIDIYTTDAKIDHLGLRVLEDDRKYF 227
            GL E Y  +     +   D GL Y A+   Q+ A  +YTTD ++    L++LEDD+ YF
Sbjct: 186 VGLKEMYDLQVGRANIRQMDAGLVYTAMHNNQVFAGLVYTTDGRLSAFNLKLLEDDKHYF 245

Query: 228 PRYDAVVLYKLDLPQRLPEAWAALKTLEGKVDEHAMIAMNARAELQSVPFDAIARDFL 285
           P Y A  + +  +    P+  A LK L  ++D+  M  +NA+ ++      A+A  FL
Sbjct: 246 PDYTAAPVVRKAVLDANPQLVALLKPLAEQLDDETMRQLNAKVDVDHQNPTAVAAAFL 303