Pairwise Alignments

Query, 290 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 618 a.a., ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  134 bits (338), Expect = 4e-36
 Identities = 87/281 (30%), Positives = 142/281 (50%), Gaps = 8/281 (2%)

Query: 7   DGIAYGMLLFVLAVGLAVTLGLMNFINLAHGAFAMAGGYLTVFAMQKLG----LPFLACL 62
           +G+A    LF++A GL++  G+   +N AHG+F M G Y+    +QKL       F   +
Sbjct: 10  NGLASASSLFLVASGLSIIFGVSRIVNFAHGSFYMLGAYMAFTLVQKLSGGTVFGFWGAI 69

Query: 63  PLAFIVVALAGALLERTLYRPMYGKPHLDQVLFSIGLAFMAVAAIDYFVGSSQQNVQLPE 122
            LA   VAL GA++E  L R +Y  P L Q+L + GL  +    +    G          
Sbjct: 70  VLAAAAVALVGAVVEMVLLRRIYQAPELLQLLATFGLVLIVQDLVLVLWGPEDLLGPRAP 129

Query: 123 WLRGRTEIGDGAFMLGMGHYRLFIIGVCAVLTVVLQLILSKTRFGSRLRAAVDDPRVAAG 182
            L+G  +I   +F      Y   +I +  V+  +L L+  +TR+G+ +RAA  D  + A 
Sbjct: 130 GLKGAIDIFGQSFP----QYDFVLIILGPVVLGLLWLLFHRTRWGTLIRAATQDREMVAA 185

Query: 183 LGINVNIVFLLTFAVGSGLAGLGGALGAEILGLDPTFPLKYMIYFLIVVSVGGTSSITGP 242
           LG+N   +F   F +G+ LAGLGGA+      ++    L+ +    ++V +GG  S+ G 
Sbjct: 186 LGVNQAWLFTSVFTLGAFLAGLGGAVQLPREAVNHVMDLQIITEAFVIVVIGGLGSVLGA 245

Query: 243 LAAALLLGIADVAGKYFIPKMGAFTVYLLMILILMWRPQGL 283
             AA+++G  +  G    P++     +L+M +IL+ RP GL
Sbjct: 246 FLAAVIIGELNAFGILIFPQLTLVLTFLVMAVILVVRPWGL 286



 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 16/278 (5%)

Query: 9   IAYGMLLFVL-AVGLAVTLGLMNFINLAHGAFAMAGGYLTVFAMQKLGLPFLACLPLAFI 67
           +A  +L+F L A  L   +G    ++  H A+   G Y     ++  G+P LA L    +
Sbjct: 336 VASEVLIFALFAASLHFMMGTGGMVSFGHAAYFGLGSYGAALMVKYFGIPMLAALVTGPL 395

Query: 68  VVALAGALLERTLYRPMYGKPHLDQVLFSIGLAFMAVAAIDYFVGSSQQNVQLPEWLRGR 127
           + A A  +      R           L  + LAF  +A    F  SS           G 
Sbjct: 396 LAAAAALVFGWFCVRLA------GAYLAMLTLAFAQIAYAVVFQWSSFTGGD-----NGL 444

Query: 128 TEIGDGAFMLGMGHYRLFIIGVCAVLTVVLQLILSKTRFGSRLRAAVDDPRVAAGLGINV 187
             I    +      +    + +C    + ++ I +   FG  LRA  D    A  +GIN+
Sbjct: 445 IGIWPAPWAANPVAFYYLTLALCGGGILAVRRI-TFAPFGYTLRACRDSALRADSIGINL 503

Query: 188 NIVFLLTFAVGSGLAGLGGALGAEILG--LDPTFPLKYMIYFLIVVSVGGTSSITGPLAA 245
           +      FA+    AG+ G+L A + G     T  +   +  L++V +GG  ++TGP+  
Sbjct: 504 SSHRWAGFALAGFFAGIAGSLYAFLKGSVFPDTISIATSVDGLVMVLLGGVQTLTGPVVG 563

Query: 246 ALLLGIADVAGKYFIPKMGAFTVYLLMILILMWRPQGL 283
           AL+     V    +  +       ++++L++ + PQG+
Sbjct: 564 ALVYKTLHVTISSYTDQWRTALGVIIIVLVVAF-PQGI 600