Pairwise Alignments

Query, 303 a.a., Murein hydrolase activator NlpD from Variovorax sp. SCN45

Subject, 262 a.a., metallopeptidase, M23B subfamily from Pseudomonas putida KT2440

 Score =  211 bits (537), Expect = 1e-59
 Identities = 127/290 (43%), Positives = 163/290 (56%), Gaps = 37/290 (12%)

Query: 20  VIAGCS-TPRGPAPVEDRGTMTRAPAPSTVPGGPPITTDANGKPLAGIENYGKPGYYAVR 78
           ++ GCS T    A V DR         +TVP  P +T+                G Y V+
Sbjct: 4   LLVGCSSTSSNSARVVDRN--------NTVPKRPAVTS----------------GQYIVK 39

Query: 79  PGDTIRRIGIETGQRWQDIVRWNNIDNPDLIEVGQVLRVIPPTGSGTSVAVAPPPSSGSE 138
           PGDT+  I    G  ++++   N I  P  I  GQ +R    +GS +   V   PSS S 
Sbjct: 40  PGDTLFSIAFRYGWDYKELAARNGIQAPYTIRPGQAIRF--SSGSSSRTTVVSSPSSSSR 97

Query: 139 GAVTKPVTPPPVIAPVT---PSTGATKPPAPVTASPASPGSGASGDEDLGWIWPASGSLI 195
             VT+        AP +   P+T A   PAPV A+  +      G     W WPA+G LI
Sbjct: 98  TTVTRRPVGSTATAPASTSKPATSAPSAPAPVVATVPAAERAVGG-----WTWPANGVLI 152

Query: 196 AGF--DEAKNKGYDISGKAGDPVLAAADGRVVYAGAGLRGYGNLIILKHNNTYLTAYAHN 253
             F  + + NKG DI+G  G PV AA+DG VVYAG+GLRGYG LII+KH++TY++AY HN
Sbjct: 153 GKFASNGSLNKGIDIAGDLGQPVFAASDGAVVYAGSGLRGYGELIIIKHSDTYVSAYGHN 212

Query: 254 QTLLVKEDQSVQKGQKIAEMGSSDADRVKLHFEIRRQGKPVDPSRYLPSR 303
           + LLV+E Q V+ GQ IAEMGS+  DRVKLHFEIRRQGKPVDP ++LP R
Sbjct: 213 RRLLVREGQQVKAGQSIAEMGSTGTDRVKLHFEIRRQGKPVDPLQFLPRR 262