Pairwise Alignments

Query, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score =  304 bits (778), Expect = 2e-87
 Identities = 163/295 (55%), Positives = 205/295 (69%), Gaps = 4/295 (1%)

Query: 10  PDIDDFIDALWLEDGLSKNTLAAYRRDLALFAQWLGEHSGGATLGTAKETDLQAYMGARL 69
           P ID F+DALWLE GLS NT  +YR DLALF  WL EHS   +L  A    +  ++  RL
Sbjct: 7   PLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHS--VSLPDAGRDLILDHLAWRL 64

Query: 70  SNRGKATSANRRLTVFKRYYRWALRERRIAADPSIRL-MPARQMPRAIKTLSEKQVDDLL 128
               K  S  R L+  + ++R+ LRE+ +A DP++++ MP    P   K+LSE  V+ LL
Sbjct: 65  DQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLP-KSLSEADVEALL 123

Query: 129 AAPDVESPLGLRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVLGKGSKERLVPFG 188
            APD+   +G RDRAMLE++YA GLRV+ELV+L    ++L  GVLRV+GKGSKERLVP G
Sbjct: 124 QAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMG 183

Query: 189 GEARRWIERYLEESRPAILDGQQTPDLFVTARGAGMTRVMFWIIVKKHATAAGIHVPLSP 248
            EA  W+ERY  + R  +L+G+ +  LF + RG  MTR  FW  +K HA  AGI  PLSP
Sbjct: 184 EEAVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSP 243

Query: 249 HTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAKHHPRG 303
           HTLRHAFATHLLNHG DLR VQ+LLGH+D+STT IYTHVA+ RL+QLHA+HHPRG
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPRG 298