Pairwise Alignments

Query, 665 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

 Score =  336 bits (862), Expect = 2e-96
 Identities = 211/559 (37%), Positives = 320/559 (57%), Gaps = 24/559 (4%)

Query: 13  SASSGYSEGSIRVLKGLEPVKQRPGMYTR-TDNPL---HIIQEVIDNAADEALAGHGKKI 68
           S +  Y   SI+VLKGL+ V++RPGMY   TD+     H++ EV+DN+ DEALAGH   I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 69  KVTLHADGSVSIEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLH 128
            V +H D S+S+ D+GRGIP  +H EE     E++ T LHAGGKFD  S   Y  SGGLH
Sbjct: 62  TVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNS---YKVSGGLH 118

Query: 129 GVGVSVTNALSKRLEVSTHREGSIAKLAFSGGDVIEQLEVRKLEAGERKQGTTVRAWPDA 188
           GVGVSV NALS++L ++  R G I +  +  G  + Q  +  +   E   GT +   P A
Sbjct: 119 GVGVSVVNALSEKLVLTVRRSGKIWEQTYVHG--VPQAPMAVVGDSETT-GTHIHFKPSA 175

Query: 189 KYFETAALPMGELTHLLRSKAVLMPGVSVTLTNEKTKESQQWLYKGGLSDYLMQTLNGDP 248
           + F+        L   +R  + L  GV + L +E++ + + + Y+GGL  ++ + LN + 
Sbjct: 176 ETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFV-EYLNTNK 234

Query: 249 VIPLFEGGGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHESGLRDG 308
             P+     H +   D   +G G +  + + +        + N IP   GGTH  G R  
Sbjct: 235 T-PVNSQVFHFNVQRD---DGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSS 290

Query: 309 LFTAVKGFIELHSLLPKG-VKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRL 367
           L  ++  +IE   L  K  V    +D     + ++S KV DP+F  Q K++L S +    
Sbjct: 291 LTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 350

Query: 368 VSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQ--RAGQKVEKRKGS-GVAVLPGKLT 424
           V   +      +L ++ +  K +    I AA+ R+  R  +++ +RKG+  +A LPGKL 
Sbjct: 351 VEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLA 410

Query: 425 DCESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEIH 484
           DC+ KD + +E++LVEGDSAGGSAK GR++ +QAILPL+GK+LN  +   D++ ++ E+ 
Sbjct: 411 DCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVG 470

Query: 485 DISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGH 544
            +  A+G       +  ++  LRY  I I++DADVDGSHI+ LLLT FFR  P+L+E G+
Sbjct: 471 TLITALGCGI--GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGY 528

Query: 545 VYVAKPPLFRVDAPARGKK 563
           +Y+A+PPL++V    RGK+
Sbjct: 529 IYIAQPPLYKV---KRGKQ 544



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 594 SISRFKGLGEMSAEQLWETTLNPDTRRLMQVQLGRFDFTSTQGEITKLMGKGEAAARREL 653
           +I R+KGLGEM+ +QLWETT++P  RR+++V +   D  +       LMG      RR+ 
Sbjct: 737 TIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIE--DAIAADQIFNTLMGDA-VEPRRDF 793

Query: 654 MELRA 658
           +E  A
Sbjct: 794 IESNA 798