Pairwise Alignments

Query, 801 a.a., DNA topoisomerase IV subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 752 a.a., DNA topoisomerase IV subunit A from Pseudomonas putida KT2440

 Score =  536 bits (1380), Expect = e-156
 Identities = 326/792 (41%), Positives = 468/792 (59%), Gaps = 72/792 (9%)

Query: 14  DGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGT 73
           DG    +LAD+ + AYL Y++ V+  RALP + DG KPVQRRI+Y+MS +GL        
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLD------- 62

Query: 74  VGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGA- 132
             AK  KSAR VGDVLG+FHPH D A Y+A+V MAQ FS RY LVDGQGN+G+ D   + 
Sbjct: 63  ADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSF 122

Query: 133 AAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVG 192
           AAMRYTEARL+R   +LL E+ +GTVD++PN+DG+ +EP +LPARLP  LLNG +GIAVG
Sbjct: 123 AAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVG 182

Query: 193 LATEIPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQIISNASDIADAYRT 252
           +AT++P HNLRE+A ACV L+    K + E+L   + GPDYP  A+I++  ++I   Y +
Sbjct: 183 MATDVPPHNLREVASACVRLL-DEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYES 241

Query: 253 GRGSLKVRARWKIEELARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQ 312
           GRGS+++RA +++E+       +VV  LP  VS  KVLE+I                   
Sbjct: 242 GRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIA------------------ 278

Query: 313 TQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTM 372
            Q++A  L ++  +RDES  +   R+V  P+++R+  DE +  L A T LE++  +N+ +
Sbjct: 279 AQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNI 338

Query: 373 VGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRHRLNKVLDRIHILEGRQLVLLNIDEVIA 432
           +G+DG+P  K+LR +L EW+ FR  TV +R +HRL+KV  R+H+L+G     LN+DEVI 
Sbjct: 339 IGLDGRPQLKNLRTLLVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIH 398

Query: 433 IIRAAEDPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELSGLRDEQKKLEDIL 492
           IIR  E PK ALI RF L++ QA+ ILE RLRQLARLE +KI  E   L  EQ KL+ +L
Sbjct: 399 IIRTEEYPKQALIERFELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALL 458

Query: 493 GSPAALRRLLVKEIEADAKTFEDPRRTLI--QAEKRAVAEVKVV-DEPVTVIVSQKGWVR 549
           GS A LR+L+  E+  DA+T+ D RR+ I  +AE +A++E +++  EPVTV++S+KGWVR
Sbjct: 459 GSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKGWVR 518

Query: 550 AQKGWASEKAAAANGGNGASAPEYSFKSGDSLYGAFECRSVDTLLVFGSAKDKSVRVYTV 609
             K            G+   A   S+K+GD    A   RS      F    D + R Y++
Sbjct: 519 CAK------------GHDIDATGLSYKAGDGFKAAAAGRSNQ----FAVLIDSTGRSYSL 562

Query: 610 PVASLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQ 669
              SLP ARG G+P+T  +    G            A  ++A+  GYGF+   E++ ++ 
Sbjct: 563 AAHSLPSARGQGEPLTGRLTPPPGATFECVLLPDDDALYVVASDAGYGFVVKGEDLQAKN 622

Query: 670 RGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATH----VACASTGGRILTFDITELKSL 725
           + GK  +           SL  GA    P P A      +A  +T GR+L F +++L  L
Sbjct: 623 KAGKGLL-----------SLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQL 671

Query: 726 PKGGRGLTLIDLEPKDTLAGAAAYTRSVKI--EGIGRGAKEREETLEIRT--LNNARGSR 781
            K G+G  +I + P D +A    +   + +  EG     +  + TL ++   L + +G R
Sbjct: 672 GK-GKGNKIIGV-PGDRVASREEFVTDLAVIPEGATLVLQAGKRTLSLKADDLEHYKGER 729

Query: 782 ARKGKAADLGFK 793
            R+G     GF+
Sbjct: 730 GRRGSKLPRGFQ 741