Pairwise Alignments

Query, 801 a.a., DNA topoisomerase IV subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

Subject, 923 a.a., DNA gyrase, subunit A from Pseudomonas putida KT2440

 Score =  374 bits (960), Expect = e-107
 Identities = 247/661 (37%), Positives = 365/661 (55%), Gaps = 80/661 (12%)

Query: 19  LTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGTVGAKP 78
           + + D  + +YL+YA+SV+ GRALPD  DG KPV RR+LY+MS +G  +         KP
Sbjct: 11  VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN--------KP 62

Query: 79  VK-SARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRY 137
            K SARVVGDV+G++HPH D A YD +VRMAQ FS RY LVDGQGNFGS DGD AAAMRY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 138 TEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATEI 197
           TE R+ ++   LL ++ + TVD++PNYDG+ + P ++P R+P  L+NG+SGIAVG+AT I
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 198 PSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQIISNASDIADAYRTGRGSL 257
           P HNL E+ D C+ALI  N +++ +EL   +PGPD+P  A II+    I +AYRTGRG +
Sbjct: 183 PPHNLGEVIDGCLALI-DNPEVTIDELMQHIPGPDFP-TAGIINGRQGIIEAYRTGRGRI 240

Query: 258 KVRARWKIEELAR--GQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQL 315
            +RAR +IE++ +  G+ Q+V+ ELP  ++  +++E+I E+   K   G           
Sbjct: 241 YMRARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEG----------- 289

Query: 316 KAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTMVGI 375
                  +  +RDES KD  +R+V E +   +  +  +  L  QT L++   IN+  + +
Sbjct: 290 -------ITELRDESDKD-GMRIVIELRRGEV-PEVVLNNLYQQTQLQSVFGINVVAL-V 339

Query: 376 DGKPTQKSLRQMLNEWIAFREVTVEKRSRHRLNKVLDRIHILEGRQLVLLNIDEVIAIIR 435
           DG+P   +L+ +L  ++  R   V +R+   L K  +R HILEG+ + L NID VIA+I+
Sbjct: 340 DGRPRLLNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIK 399

Query: 436 AAEDP---KAALIA----------------------------------RFNLSDRQAEDI 458
           A+  P   K AL++                                  ++ LS  QA+ I
Sbjct: 400 ASPTPSEAKEALVSTPWESSAVQVMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAI 459

Query: 459 LEIRLRQLARLEAIKIEQELSGLRDEQKKLEDILGSPAALRRLLVKEIEADAKTFEDPRR 518
           L++RL +L  LE  K+  E   + ++  +L  IL S   L  ++ +E+EA    + D RR
Sbjct: 460 LDLRLHRLTGLEHEKLLAEYQEILEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRR 519

Query: 519 T-LIQAEKRAVAEVKVVDEPVTVIVSQKGWVRAQKGWASEKAAAANGGNGASAPEYSFKS 577
           T ++ A         + +E   V +S  G+ + Q    S   A   GG G SA     K 
Sbjct: 520 TEILNASHDLNYGDMIPEEERVVTISHGGYAKTQP--LSAYQAQRRGGKGKSAT--GVKD 575

Query: 578 GDSLYGAFECRSVDTLLVFGS-AKDKSVRVYTVPVASLPGARGDGQPVTTLIELDAGTHV 636
            D +       S  TLL+F S  K    + Y +P AS       G+P+  L+ L+ G  +
Sbjct: 576 EDYIEHLLVANSHATLLLFSSKGKVYWKKTYEIPEAS---RAARGRPLVNLLPLEEGERI 632

Query: 637 T 637
           T
Sbjct: 633 T 633



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 21/175 (12%)

Query: 576 KSGDSLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLP----GARGDGQPVTTLIELD 631
           K GD+L  A        +++F  A  K +R     V  +     G RG        ++L 
Sbjct: 721 KEGDTLIAAAITDGAKEVMMFSDA-GKVIRFAESVVREMGRNARGVRG--------MKLG 771

Query: 632 AGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVG-EGEQLCRPSLV 690
            G  +        G+ +L A+  G+G    +     R RGG+  I +G +G         
Sbjct: 772 KGQRIISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN------- 824

Query: 691 GGASGAEPMPAATHVACASTGGRILTFDITELKSLPKGGRGLTLIDLEPKDTLAG 745
           G   GA  +     +   S  G ++   + E+ SL +  +G+TLI L   +TL G
Sbjct: 825 GLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQGVTLIKLAADETLVG 879