Pairwise Alignments

Query, 265 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 278 a.a., amino acid ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  182 bits (463), Expect = 5e-51
 Identities = 104/260 (40%), Positives = 151/260 (58%), Gaps = 2/260 (0%)

Query: 4   TTTRRAAIAALGLGAALTVFAPF-ACAQSVADIKKKGEITIGMLVDFPPYGTTDAKNQPD 62
           T TR     A+GL A L +  P  A A+++ + K  G+I IG+  D  P+G  ++    +
Sbjct: 6   TKTRWRTALAVGLAALLPILTPAGADARTLEEAKSSGKIVIGIQGDNAPWGFINSSGVQE 65

Query: 63  GYDADVAKLLAKDWGVKANIVPVTGPNRIPFLLTNKVDLLVASLAITPERAKQVQFSQPY 122
           GYDAD+A+  A   G+K   VP+   NRIP L T KVD L AS+ +TPERAK VQ++QPY
Sbjct: 66  GYDADLARGFADYLGLKVEFVPLAVANRIPSLRTGKVDALFASMGMTPERAKNVQYAQPY 125

Query: 123 AAATIVLYGASKTPIKAAADLKGLRVGVARASTQDVAVTKAAPEGTEIRRFDDDASAMQA 182
           A   + +Y      I    DL G+ VG  ++S  D A+T  A     I RFDDDA+ +QA
Sbjct: 126 AHNVMSVYATKDKKIANFDDLTGMTVGAPKSSPMDTALTAGAGTKANILRFDDDAATIQA 185

Query: 183 LISGQVDAIGCSVTVAAQIAKRVPANTYENKFTLVQQSMGIAMRPGQEELTKAVNEFVQK 242
           ++SGQ++AIG +     ++A       YE KF LV      A RPG+++  +A+N ++ K
Sbjct: 186 ILSGQIEAIGGNQFYGDRLA-AAGGKDYEVKFDLVTLYNSAATRPGEKDWNEALNAWLDK 244

Query: 243 NTANGELNKLYQKWLQVDLP 262
             ANG+L K+Y KW++  +P
Sbjct: 245 AKANGDLAKVYAKWMKRPVP 264