Pairwise Alignments

Query, 287 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 267 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  133 bits (335), Expect = 4e-36
 Identities = 82/238 (34%), Positives = 127/238 (53%), Gaps = 6/238 (2%)

Query: 49  IVGLILL--WWAVIVVFGVKPFIAPTPWAVLETLYAKRDVLLDNLLPTAFEAAGGFVLGN 106
           +VG +LL  W    + + V  ++ P+P  +  TL A   +LL  L  T       F L  
Sbjct: 22  LVGALLLGVWQLACIAWKVPVYLVPSPADIGRTLVADGPMLLGALWMTLKITFLSFALAV 81

Query: 107 LAAIVIATIFVHNKTLQDIFFPVVLMFNAVPLVAKAPVLVLIMGNGVEPKITIAALVCFF 166
           +   + A +FV ++ ++   FP  ++    P+VA AP++++   +     +  A LV  F
Sbjct: 82  VIGTLAAFVFVQSRVVEASLFPYAILLQVTPVVAIAPLIIIWCSDTTLALVICATLVAIF 141

Query: 167 PTLVNMVRGLESVNPQAMELMRVLSASKTEIFFRLRLLNALPYLFSALRIAASMCVIGAV 226
           P + N V GL SVNP  + L  +  AS+ ++  RLR+ +ALP  F+ LRIA+ + +IGAV
Sbjct: 142 PIIANTVLGLRSVNPGLLNLFHLNRASRWQVLLRLRIPSALPCFFAGLRIASGLALIGAV 201

Query: 227 VGEWVGATVGIGA----MILQATFNFDSPLLYAAIVMSATLSGLFFLLVALAEKLVIR 280
           V E+V  T G GA     ILQA F  + P L+AA+V+ A      F L+AL  +L +R
Sbjct: 202 VAEFVAGTGGTGAGLAYQILQAGFQLNIPRLFAALVLIALTGVALFSLMALLARLSLR 259