Pairwise Alignments

Query, 385 a.a., Domain of unknown function / Efflux ABC transporter, permease protein from Variovorax sp. SCN45

Subject, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

 Score = 58.5 bits (140), Expect = 7e-13
 Identities = 89/397 (22%), Positives = 167/397 (42%), Gaps = 45/397 (11%)

Query: 2   LLALIRKELLALVRDMHGLA-----ALFVMPMVFIVLMSLTLKDIYRPPLAELTYAIDMR 56
           LLA+  +E   L+RD   LA     A+F+M ++F   +SL +++        L +A+  +
Sbjct: 538 LLAVAVREGKELLRDKVRLAFALLGAVFMM-VIFGYGISLDVEN--------LAFAVHDQ 588

Query: 57  DTATPAQWLKQLWQ--RNHGAPQPLGD--DWQARLRNGSLKYVIVMEQGLSEELESAALS 112
           D +  ++   + ++  R      P+ D  +   RL+   +K  + +  G   +L +    
Sbjct: 589 DQSPQSRAYLEAFRGSRYFAEQAPIRDSSELHQRLQRSEIKLALEIPPGFGRDLYAGR-- 646

Query: 113 TQARVHLLTEPGIDANLFNAL--RAELVGASGELKARLALAVPGTAGPAPDASIQAMVRA 170
                    +P + A L   +  RAE      E   +  L     A P P    Q  VR 
Sbjct: 647 ---------QPVVAAWLDGGMPFRAETSRNYVEAVHQANLEQLAKASPQPQPR-QDPVRL 696

Query: 171 ERFSTAGPRPTSVQQNVPAWLVFGMFFVVASLSSL-FVQERSSGALGRLQSLGVSRFTLL 229
           E          SV    P  +   + F+ A L++L  V+E+  G++    +  ++R   L
Sbjct: 697 ETRFRYNQDVVSVNAIGPGVMALILAFIPAMLTALGIVREKELGSITNFYATPLTRLEFL 756

Query: 230 ASKALPYLGVNALQAVLMIAAGIW-FMPLIGGDALSLAGIHWGALLLSLAAVSLAAVSLS 288
             K +PYL V+ +   L++A   W F   + G  L+LA            A  LA  SL 
Sbjct: 757 LGKQMPYLAVSLVNLALLVAMNRWLFAVPLKGSVLALA--------CGGVAYLLATTSLG 808

Query: 289 LALACLVRSHAQAATIGPMVNVLMAAA--GGIMVPKFVMPGFMQRLVEISPMNWGLEALL 346
           L ++   R+   AA +G M+   +      G++VP+  + G    + ++ P  + L+  +
Sbjct: 809 LLISAFTRTQI-AAILGTMIITSLPTIQFSGLIVPRSSLDGAAAVMGQLFPAGYFLDIAV 867

Query: 347 TVLLRGGGVADALPQIGRLVVFAALMFFIAVFLFRRR 383
               +  G+ +  PQ   L+ F A    +++ + +++
Sbjct: 868 GTFTKALGLRELWPQCLILLSFFAAFTGLSLAMLKKQ 904