Pairwise Alignments

Query, 1028 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1059 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

 Score =  537 bits (1383), Expect = e-156
 Identities = 343/1058 (32%), Positives = 562/1058 (53%), Gaps = 49/1058 (4%)

Query: 7    FIRRPVLAMVVSLLIVVLGLRALAGLPVNQYPKTENGVVTITTAYYGADAATVAGFITQP 66
            FI RP+ A V++++I++ GL A+  LPV Q+P+     VTI T Y GA+A T+    TQ 
Sbjct: 5    FIDRPIFAWVIAIVIMLAGLLAIRSLPVAQFPEIAPPAVTIQTTYPGANAQTLESTTTQI 64

Query: 67   LEAAVSQAQGIDYLSSSSS-LGVSTITATLRLNYDSNRALTEINTQVNSVRNQLPPQAQQ 125
            +E  +     + Y SS+S   G   IT T     D + A  ++  +++     LP + QQ
Sbjct: 65   IEQQLKGIDNLRYFSSTSDGSGNLNITLTFEQGTDPDIAQVQVQNKLSQATPLLPQEVQQ 124

Query: 126  PVLTVATGQTTDAMYIGFYSDT--LPNNNVTDFLVRVVQPKLNAIPGVQTAEILGARTFA 183
              L V    ++  + +  YSD       +  DF+   +Q  L+ + GV   ++ G++ +A
Sbjct: 125  QGLRVGKSTSSFLLIMAAYSDDGIHDQEDAADFIASSLQDPLSRVTGVGDTQLFGSQ-YA 183

Query: 184  LRAWLDAQKMAAFGVTATDVSAALAANNYLAAVGQ------SKGQMVSVPLTAGTSLHSV 237
            +R WLD  KMA  GVT  DV +A+ A N   + GQ       KGQ ++  +TA + L + 
Sbjct: 184  MRIWLDPYKMANLGVTTGDVKSAITAQNAQVSAGQIGGSPSPKGQALNATVTAQSRLRTP 243

Query: 238  DEFKQLSIKS-SNGAIVRLQDVANVTLGSENYDFNVAFNGVRSVFIGIKVAPEANILDVA 296
            +EF+ + ++S S+G++V ++DVA V LG+E Y F V FNG  +   GIK+AP AN LD  
Sbjct: 244  EEFQNIRLRSNSDGSVVLMKDVAKVELGAETYGFGVKFNGHPASGFGIKLAPGANALDTV 303

Query: 297  KQVRTTFPDLQSQLPSGLTGKIVYDSTDFINTSISEVIKTLVEALVIVTVVIYLFLGSFR 356
            + V+     L    PS +      D++ F+  S+ +V+ TL EA+++V VV++LFL ++R
Sbjct: 304  EAVKARVDQLSKNFPSWVKYDFPVDNSTFVKLSVEQVVHTLFEAVLLVFVVMFLFLQNWR 363

Query: 357  AVVVPVIAMPLSLIGTFFIMLVLGYSINLLTLLALVLAIGLVVDDAIIVVENVDRHMR-E 415
            A ++P IA+P+ L+G   I+   G++IN LTL  +VLAIGL+VDDAI+VVENV+R ++ E
Sbjct: 364  ATLIPTIAVPVVLLGALAILSAAGFTINTLTLFGMVLAIGLLVDDAIVVVENVERLIQDE 423

Query: 416  GKSPMQASLLAARELGGPILAMTVVLVAVYVPIGFQGGLTGSLFTEFAFTLAGSVVVSGI 475
            G SP +A+  +  E+ G ++ + +VL AV++P+ F GG TG +F +F+ T+  S+++S +
Sbjct: 424  GLSPKEAAKKSMDEISGALIGIGLVLSAVFLPMAFFGGSTGVIFRQFSITIVSSMILSVL 483

Query: 476  VALTLSPMMCSRFFKPEQD-----------TGKFATFIEHTFERVHRRYQLILRSVLKTW 524
            VAL L+P +C+   KP               G+F  +   TF++   RY   +  V ++W
Sbjct: 484  VALILTPALCATILKPASHGHSWNGPIGSILGRFFDWFNRTFDKGVVRYGKGVEKVERSW 543

Query: 525  -PVMIVMGVILVALLFVMFKMSKSELAPEEDQGIVLSQVVGAPTATINQIQTYADQI--F 581
               M+V G+++V + F+  ++  S   P+EDQGI+++QV      T+ + +    ++   
Sbjct: 544  VRTMLVYGLVVVGMAFIFLRL-PSGFLPDEDQGIIINQVSLPAGTTLEETERALARMRDH 602

Query: 582  QIAHDTPEYAQLFQLTGV----PSTNAGIAGVLLKPWDQRTRSAH---DIQTDLQKRWNG 634
             +  +    + +F + G        N GI    +K W +R+ + +    I       +  
Sbjct: 603  YLVDEKKNVSAVFTVAGFGFVGQGQNVGIVFARMKDWHERSGADNRVPAIALRANMAFQK 662

Query: 635  IAGAKVVAFQFPA---LPGASGLPVQFVIKTTEPFENLNTLAQQVMDKARADGKFYYIDA 691
            I+     AF  PA   L  ASG   Q + +     E L     Q++  A  D +   +  
Sbjct: 663  ISSGMAFAFVPPAVQELGNASGFDFQLLDQANLGHEKLLEARNQLLGMAMGDKRLAQVRP 722

Query: 692  DLKIDLPQATVVVDRDKIATLGITQQDVGNAMGAALGGGYVNYFSIAGRSYKVIPQVQQV 751
            +   D PQ  + VD+     LGI Q DV + +   LGG YVN F    R  +V  Q    
Sbjct: 723  NGLEDTPQLKLNVDQAAAGALGIAQSDVNDTISTNLGGSYVNDFIDRDRVKRVYVQADAP 782

Query: 752  DRLNPSDVLNFYIKTPNGVV-PASTVASLKYSVQPETVNHFQQLNSVTIQGVP-----SG 805
             R +   +  ++++   GV+ P S  ++ ++   P  +  +  + S+ IQG P     SG
Sbjct: 783  FRTSADAINAYHVRGSTGVMAPLSAFSTTEWVQGPARLERYNGVPSMNIQGAPAPGVSSG 842

Query: 806  TQGETLEYLRGVVQQLAPSGYSVDYSGQSRQFVQESGNFAITFVFALIIVFLALSAQFES 865
            T  + +E     +    P+G    ++G S +     G     +  +++IVFL L+A +ES
Sbjct: 843  TAMQAMEEFAAKL----PAGIGYAWNGISYEEQTSGGQAPYVYALSMLIVFLCLAALYES 898

Query: 866  FRDPVVILVSVPLALFGAMIFIFWGFASMNIYTQVGLVTLMGLISKHGILIVEVANRLQK 925
            +  P+ +++ VPL + GA+I       + +IY QVGL+T +G+ +K+ ILIVE A    +
Sbjct: 899  WSVPIAVMLVVPLGVLGAVIAATLAGLNNDIYLQVGLITTIGVSAKNAILIVEFAEEKMR 958

Query: 926  QGLSKLDAIVEAAGTRLRPILMTTAAMVFGVLPLVIASGAGAAGRKAMGIVIFSGLSIGT 985
            +GL    A +EA   RLRPILMT+ A +FGVLPL ++ GAGA G+ A+G  +  G+   T
Sbjct: 959  EGLPPAKAALEAGKLRLRPILMTSFAFIFGVLPLAVSKGAGAGGQNAIGWAVVGGMLSAT 1018

Query: 986  LFTLFVVPAMYLAIAARHKK-EEAEEEGTATG-TPALP 1021
            +  +F VP  +  +    ++  E EE+  A G TP  P
Sbjct: 1019 VLAIFFVPVFFTVVKRLFREHHEGEEQRNADGETPNAP 1056