Pairwise Alignments

Query, 1028 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  830 bits (2143), Expect = 0.0
 Identities = 452/1016 (44%), Positives = 652/1016 (64%), Gaps = 12/1016 (1%)

Query: 1    MNFTDIFIRRPVLAMVVSLLIVVLGLRALAGLPVNQYPKTENGVVTITTAYYGADAATVA 60
            M FTD+F+RRPVLA+VVS LI+++GL A+  LP+ QYP  E+  +TI+T Y GA A  + 
Sbjct: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60

Query: 61   GFITQPLEAAVSQAQGIDYLSSSSSLGVSTITATLRLNYDSNRALTEINTQVNSVRNQLP 120
            GF+TQP+  AVS  +GIDYLSSSS  G S IT  + LN DS +AL E   +VN VR +LP
Sbjct: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120

Query: 121  PQAQQPVLTVATGQTTDAMYIGFYSDTLPNNNVTDFLVRVVQPKLNAIPGVQTAEILGAR 180
             +A  PV+ ++ G +T   Y+GF SD+L    ++D+L RVV+P+ + I GV   +  G +
Sbjct: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180

Query: 181  TFALRAWLDAQKMAAFGVTATDVSAALAANNYLAAVGQSKGQMVSVPLTAGTSLHSVDEF 240
              A+R WLD+++MA  GVTA DV+ A+ ANNY A  GQ +GQ V   +   T L  V++F
Sbjct: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240

Query: 241  KQLSIKSSNGAIVRLQDVANVTLGSENYDFNVAFNGVRSVFIGIKVAPEANILDVAKQVR 300
            ++L I++    +VRL+D+  V L +     +   +G  +V +G+   P  N L + + +R
Sbjct: 241  RELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGIR 300

Query: 301  TTFPDLQSQLPSGLTGKIVYDSTDFINTSISEVIKTLVEALVIVTVVIYLFLGSFRAVVV 360
               P +Q  LP G+   + Y++  FI+ SI EV++TLVEA++IV +VI+L LGS R+V++
Sbjct: 301  QLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLI 360

Query: 361  PVIAMPLSLIGTFFIMLVLGYSINLLTLLALVLAIGLVVDDAIIVVENVDRHMREGKSPM 420
             V+A+PLS++G   +ML+ G+S+NLLTLLA+VLAIGLVVDDAI+VVENV RH+ EGKSP+
Sbjct: 361  AVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPI 420

Query: 421  QASLLAARELGGPILAMTVVLVAVYVPIGFQGGLTGSLFTEFAFTLAGSVVVSGIVALTL 480
             A+L  ARE+ GP++AMT+ L AVY PIG  GGLTG+LF EFA TLAG+V+VSGIVALTL
Sbjct: 421  AAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALTL 480

Query: 481  SPMMCSRFFKPEQDTGKFATFIEHTFERVHRRYQLILRSVL-KTWPVMIVMGVILVALLF 539
            SP+M S   +P Q  G  A   +  F  +   Y  +L   L   W   I  GV L+  L 
Sbjct: 481  SPVMSSLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRW---ISGGVALLVCLS 537

Query: 540  V--MFKMSKSELAPEEDQGIVLSQVVGAPTATINQIQTYADQIFQIAHDTPEYAQLFQLT 597
            +  ++ + + ELAP EDQ  VL+ +     A++   + +A ++ Q+     E    + + 
Sbjct: 538  LPWLYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTDTWIIN 597

Query: 598  GVPSTNAGIAGVLLKPWDQRTRSAHDIQTDLQKRWNGIAGAKVVAFQFPALPGAS-GLPV 656
            G     A   G+ L  W  R RSA  +Q  LQ+    I G+ + AFQ  +LPG+S GLPV
Sbjct: 598  GTDGPAASFGGINLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASLPGSSGGLPV 657

Query: 657  QFVIKTTEPFENLNTLAQQVMDKARADGKFYYIDADLKIDLPQATVVVDRDKIATLGITQ 716
            Q V+++ + +  L    + +  +AR  G F  +D+DL  + P   V VDR K A+LGI+ 
Sbjct: 658  QMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAASLGISM 717

Query: 717  QDVGNAMGAALGGGYVNYFSIAGRSYKVIPQVQQVDRLNPSDVLNFYIKTPNG-VVPAST 775
            Q +G ++G  +G  Y+N F++ GRSY VIPQ  Q  RL P+ +   Y++  +G +VP +T
Sbjct: 718  QAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVRAEDGSLVPLAT 777

Query: 776  VASLKYSVQPETVNHFQQLNSVTIQGVPSG--TQGETLEYLRGVVQQLAPSGYSVDYSGQ 833
            +  L   V P  +  F Q N+ T+Q +P+   + G  + +L  +  +L P G+S D+  +
Sbjct: 778  LVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAEL-PPGFSHDWQSE 836

Query: 834  SRQFVQESGNFAITFVFALIIVFLALSAQFESFRDPVVILVSVPLALFGAMIFIFWGFAS 893
            SRQ+VQE       F+ AL++++L L+AQ+ES  DP++ILV+VPL++ GA++ +  G+A+
Sbjct: 837  SRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLALGWAT 896

Query: 894  MNIYTQVGLVTLMGLISKHGILIVEVANRLQ-KQGLSKLDAIVEAAGTRLRPILMTTAAM 952
            +NIYTQ+GLVTL+GLISKHGIL+V  AN +Q +  L +  AIV AA  RLRP+LMTTAAM
Sbjct: 897  LNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLMTTAAM 956

Query: 953  VFGVLPLVIASGAGAAGRKAMGIVIFSGLSIGTLFTLFVVPAMYLAIAARHKKEEA 1008
             FGVLPL+ ASGAGA  R  +G+VI  G+ +GTLFTLFV+P +Y  +A  H+   A
Sbjct: 957  TFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLARDHRVSTA 1012