Pairwise Alignments

Query, 1028 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score =  538 bits (1386), Expect = e-157
 Identities = 338/1039 (32%), Positives = 568/1039 (54%), Gaps = 35/1039 (3%)

Query: 7    FIRRPVLAMVVSLLIVVLGLRALAGLPVNQYPKTENGVVTITTAYYGADAATVAGFITQP 66
            FI RP+ A V++L+I+++G  ++  LP+NQYP      + I   Y GA A TV   + Q 
Sbjct: 5    FIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDTVVQV 64

Query: 67   LEAAVSQAQGIDYLSS-SSSLGVSTITATLRLNYDSNRALTEINTQVNSVRNQLPPQAQQ 125
            +E  ++    + Y+SS S+S G  TITAT     + + A  ++  ++N     LP + QQ
Sbjct: 65   IEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQEVQQ 124

Query: 126  PVLTVATGQTTDAMYIGFYSD--TLPNNNVTDFLVRVVQPKLNAIPGVQTAEILGARTFA 183
              + V        + IG  S+  ++  +++ +++V  +Q  ++   GV   ++ GA+ +A
Sbjct: 125  QGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGAQ-YA 183

Query: 184  LRAWLDAQKMAAFGVTATDVSAALAANNYLAAVGQS------KGQMVSVPLTAGTSLHSV 237
            +R WLD  K+  F +T  DV  A+AA N   + GQ        G  ++  +   T L + 
Sbjct: 184  MRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRLQTA 243

Query: 238  DEFKQLSIK-SSNGAIVRLQDVANVTLGSENYDFNVAFNGVRSVFIGIKVAPEANILDVA 296
            ++F+ + +K + +G+ VRL DVA V LG ENY  +  FNG  +  + +K+A  AN LD A
Sbjct: 244  EQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANALDTA 303

Query: 297  KQVRTTFPDLQSQLPSGLTGKIVYDSTDFINTSISEVIKTLVEALVIVTVVIYLFLGSFR 356
            K +R T   L+   P G+     YD+T  +  SIS VI TL+EA+V+V +V+YLFL +FR
Sbjct: 304  KALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFR 363

Query: 357  AVVVPVIAMPLSLIGTFFIMLVLGYSINLLTLLALVLAIGLVVDDAIIVVENVDRHM-RE 415
            A ++  + +P+ L+GTF I+   G+SIN LT+ A+VLAIGL+VDDAI+VVENV+R M  E
Sbjct: 364  ATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMSEE 423

Query: 416  GKSPMQASLLAARELGGPILAMTVVLVAVYVPIGFQGGLTGSLFTEFAFTLAGSVVVSGI 475
            G  P +A+  +  ++ G ++ + +VL AV +P+ F GG TG ++ +F+ T+  ++ +S +
Sbjct: 424  GLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVL 483

Query: 476  VALTLSPMMCSRFFKP----EQDTGK--FATFIEHTFERVHRRYQLILRSVLKT-WPVMI 528
            VAL  +P +C+   KP    E  T K  F  +    F+R    Y+  + ++L+   P ++
Sbjct: 484  VALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVPFLL 543

Query: 529  VMGVILVALLFVMFKMSKSELAPEEDQGIVLSQVVGAPTATINQIQTYADQI--FQIAHD 586
               +I+V +++ +F    +   PEEDQG++ +QV     ++  + Q   DQ+  + +  +
Sbjct: 544  AYALIVVGMIW-LFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLKDE 602

Query: 587  TPEYAQLFQLTGV----PSTNAGIAGVLLKPWDQRTR--SAHDIQTDLQKRWNGIAGAKV 640
                + +F + G        ++G+A ++LKPWD+R++  S   +    Q+ +     A V
Sbjct: 603  ADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSKENSVFALAQRAQQHFFTFRDAMV 662

Query: 641  VAFQFPA---LPGASGLPVQFVIKTTEPFENLNTLAQQVMDKARADGKFYYIDADLKIDL 697
             AF  PA   L  A+G  V    +     E L     Q + KA        +  +   D 
Sbjct: 663  FAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVRPNGLNDE 722

Query: 698  PQATVVVDRDKIATLGITQQDVGNAMGAALGGGYVNYFSIAGRSYKVIPQVQQVDRLNPS 757
            PQ  + +D ++ + LG+T  D+ N +  ALG  YVN F   GR  KV  Q +   R++P 
Sbjct: 723  PQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSARMSPE 782

Query: 758  DVLNFYIKTPNG-VVPASTVASLKYSVQPETVNHFQQLNSVTIQGVPSG--TQGETLEYL 814
            D+  +Y++   G +VP S+ A  +++     ++ +  + ++ I G P+   + GE +  +
Sbjct: 783  DLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAMAEV 842

Query: 815  RGVVQQLAPSGYSVDYSGQSRQFVQESGNFAITFVFALIIVFLALSAQFESFRDPVVILV 874
              +  +L PSG    ++G S +           F  +++ VFL L+A +ES+  P+ +++
Sbjct: 843  ERIAGEL-PSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIAVVL 901

Query: 875  SVPLALFGAMIFIFWGFASMNIYTQVGLVTLMGLISKHGILIVEVANRLQKQGLSKLDAI 934
             VPL + GA+I       S ++Y  VGL+T +GL +K+ ILIVE A  L +QG S  DA 
Sbjct: 902  VVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLYDAA 961

Query: 935  VEAAGTRLRPILMTTAAMVFGVLPLVIASGAGAAGRKAMGIVIFSGLSIGTLFTLFVVPA 994
            +EA   RLRPI+MT+ A + GV+PL IASGAGA  + A+G  +  G+   T+  +F VP 
Sbjct: 962  IEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIFWVPL 1021

Query: 995  MYLAIAARHKKEEAEEEGT 1013
             ++A+++    +E E++ T
Sbjct: 1022 FFVAVSSLFGSKEPEKDVT 1040