Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 391 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

 Score =  102 bits (255), Expect = 1e-26
 Identities = 95/366 (25%), Positives = 146/366 (39%), Gaps = 58/366 (15%)

Query: 26  AVPKPGPQTVSTVEVQKLQWQSQFTAVGTLNPVRGADLSTEVAGLVRNVHFKSGQDVKAG 85
           A P P    V   + ++     +  A+GT+  +    + + VA  V  V F  G  VK G
Sbjct: 50  AAPPPRVVAVLAGKAERTSLPVRVEALGTVESMVTVPVRSRVAAAVEKVGFADGATVKEG 109

Query: 86  ALLVELNADSDIALLHSAEAAAAQAATVLKRDQAQLAVQ--------------AVSQAQI 131
            LL +L+           +A   QA   L RD+ QL                 AVSQ Q+
Sbjct: 110 DLLYQLDP-------RVIDAQILQAEATLNRDKVQLEKNLRDVERYAGLATRNAVSQVQV 162

Query: 132 DADVNDLKAKRAQVEQQAAVVAKK-------SIRAPFAGRLGITALNPGQYVNAGDKLVT 184
           D        ++A V Q  A +           IR+P  GR+G++++ PG  +   D L T
Sbjct: 163 DDARTTADVQKAVVAQDEANLTALRVQRGYYEIRSPATGRIGVSSVRPGTVIRVDDTLAT 222

Query: 185 LQTLDPIYVDFTLPQQQLAGL--AVGQVVNLTVDTFPGQSFSGKINAISPKVDAATRNVQ 242
           ++ L PIYV F LP++ +AGL  A    V+ T+         G +  I   ++  T  + 
Sbjct: 223 VRQLAPIYVAFGLPERYIAGLRAAKDAKVSFTIQGTGETISGGTVAVIDNTIEPQTGTLT 282

Query: 243 VEATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEPPKAGA 302
             A   N  + L PG    V + +      + +PS AV     G  V++V          
Sbjct: 283 ARAIFPNADERLWPGALGAVTVTLRIEDNVVAVPSEAVQNGQDGPFVFIVDDG------- 335

Query: 303 PGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQNKLKN 362
                         A  +P  V + V          +  I KGL+ G+ VV+ GQ  L+ 
Sbjct: 336 -------------IAHVRPVTVTRTV--------DGRSVIAKGLDGGETVVTDGQLSLRE 374

Query: 363 GTPVTV 368
           G+ V+V
Sbjct: 375 GSRVSV 380