Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 373 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  321 bits (822), Expect = 2e-92
 Identities = 176/384 (45%), Positives = 247/384 (64%), Gaps = 25/384 (6%)

Query: 1   MIGCVLLLVAAL---ALGKFLQIRALIAAVPKPGPQTVSTVEVQKLQWQSQFTAVGTLNP 57
           M+  V L+  AL    L K   I+  +A++  P PQTV+T       WQS   AVG++  
Sbjct: 8   MLAAVALVFGALYGFQLFKASMIKQALASLRDP-PQTVATTVATLTPWQSTVKAVGSVRA 66

Query: 58  VRGADLSTEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKRD 117
             GADL+ E +G V  ++FKSG +V+ G +L++L  + ++A L + +A A  +A +L RD
Sbjct: 67  EAGADLALESSGTVAKINFKSGDEVREGQVLLQLRDEQEVANLAALKATADVSAIILNRD 126

Query: 118 QAQLAVQAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVN 177
           Q QL + AVSQA ID+D  +LK   AQV +Q AVV KK+++APF+GRLGI +++ GQYV+
Sbjct: 127 QEQLKIHAVSQATIDSDTANLKKALAQVAEQQAVVEKKTLKAPFSGRLGIRSVDLGQYVS 186

Query: 178 AGDKLVTLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDAA 237
           AG  +VTLQ+L+PI++DF LPQQ LA +  GQ V  TVDT+PGQ+F G + AISPKVD  
Sbjct: 187 AGTTVVTLQSLNPIFIDFYLPQQALAEVKAGQTVKATVDTYPGQAFEGTVTAISPKVDVT 246

Query: 238 TRNVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEP 297
           +RNVQ+ A   N    L PGMFA V++ +G     +T+P TA+  NPYG  V+VV++ E 
Sbjct: 247 SRNVQLRAEFRNDDHRLTPGMFATVEVAVGTPDAFVTVPQTAIMANPYGDIVFVVEKKEG 306

Query: 298 PKAGAPGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQ 357
              G                     L A+QVFV+TG TRGDQI+++ G++AG  VV++GQ
Sbjct: 307 SATG---------------------LAARQVFVKTGATRGDQIAVLSGIKAGDQVVAAGQ 345

Query: 358 NKLKNGTPVTVDNSVKPTNDPAPT 381
            KL NG+ V+V+N+V P NDPAP+
Sbjct: 346 MKLHNGSLVSVNNAVLPANDPAPS 369