Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 388 a.a., RND transporter MFP subunit from Pseudomonas simiae WCS417

 Score =  108 bits (269), Expect = 3e-28
 Identities = 109/391 (27%), Positives = 173/391 (44%), Gaps = 61/391 (15%)

Query: 5   VLLLVAALALGKFLQIRALIAAVPKPGPQTVSTVEVQKLQWQSQFTAVGTLNPVRGADLS 64
           V+L VAA AL +    ++ +AA   P    V  V V +       + +G++  +    + 
Sbjct: 15  VVLAVAAWALTR--PAKSKLAA---PTAIPVRVVSVAQQDIPRFVSGIGSVLSLHSVVIR 69

Query: 65  TEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEA------AAAQAATV-LKRD 117
            +V G++  +  K GQ VKAG LL  ++  S  A L  A+A      A  Q A V LKR 
Sbjct: 70  PQVDGILTKLLVKEGQLVKAGDLLATIDDRSIRASLDQAKAQLGESQAQLQVALVNLKRY 129

Query: 118 QAQLAVQAVSQAQID---ADVNDLKA----KRAQVEQQAAVVAKKSIRAPFAGRLGITAL 170
           +A      VS+   D   A VN LKA     +A ++     ++   IR+P +GR+GI  +
Sbjct: 130 KALSVDDGVSKQTYDQQQALVNQLKATAQGNQAAIDSAQVQLSYTQIRSPVSGRVGIRTV 189

Query: 171 NPGQYVNAGDK--LVTLQTLDPIYVDFTLPQQQLAGLA--VGQVVNLTVDTFPGQSFSGK 226
           + G ++   D   L ++  +DPI V+F+LPQQ L  L   +      +VD + G    G+
Sbjct: 190 DEGNFLRTSDAQGLFSVTQIDPIAVEFSLPQQMLPTLQGLIAAPTQASVDAYLGADTDGQ 249

Query: 227 ---------INAISPKVDAATRNVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLPS 277
                    ++ I  ++ + T  ++ +A  +N  Q L PG    +KI     +  L +P 
Sbjct: 250 TGDLLGEGHLSLIDNQISSTTGTLRAKAEFNNASQRLWPGQLVTIKIQTALDKNALVVPP 309

Query: 278 TAVTYNPYGSTVYVVKQAEPPKAGAPGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRG 337
           T V        VY V                           K  +V  QV  +      
Sbjct: 310 TVVQRGLDSHFVYRVN------------------------GDKVDVVPVQVTYQ-----D 340

Query: 338 DQISIVKGLEAGQVVVSSGQNKLKNGTPVTV 368
             ++I+KG++AG V+VS GQ++LK G  V V
Sbjct: 341 SDVNIIKGVQAGDVLVSDGQSRLKAGAQVEV 371